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BAC Library Proposals and Information
Organism
(Common Name)
|
Organism
(Scientific Name)
|
Taxonomy
|
Genome
Size (Mb)
|
Library
Name
|
Library
Status
|
Source of DNA |
Number of
Recombinant
Clones |
Average
Insert Size
(kb) |
Depth of
Coverage |
Additional /
Ordering Info
|
| Strain |
Sex |
Tissue |
| Ant, Fire |
Solenopsis wagneri |
Insect |
800 |
SW_Ba |
Available |
|
M/F |
Pupae |
73,728 |
132 |
11.0 |
AGI/CUGI |
Aphid, Pea  |
Acyrthosiphon pisum |
Insect |
300 |
|
In Progress |
|
|
|
|
|
|
BRI |
| Aplysia |
Aplysia californica |
Mollusk |
|
|
In Progress |
|
|
|
|
|
|
CHORI |
| Armadillo, Nine-banded |
Dasypus novemcinctus |
Mammal |
3,000 |
VMRC-5 |
Available |
Wild-caught |
M |
Blood |
211,200 |
143 |
10.0 |
BRI |
| Bat, Greater Horsehoe |
Rhinolophus ferrumequinum |
Mammal |
2,230 |
VMRC-7 |
Available |
|
M |
Brain |
161,280 |
165 |
>10.0 |
BRI |
| Bat, Little Brown |
Myotis lucifugus |
Mammal |
2,500 |
CHORI-235 |
Available |
|
F |
Kidney |
202,749 |
160 |
13 |
CHORI |
| Butterfly, Satyrid |
Bicyclus anynana |
Insect |
490 |
|
In Progress |
|
|
|
|
|
|
AGI/CUGI |
| Chimpanzee |
Pan troglodytes |
Mammal |
3,000 |
CHORI-251 |
Available |
N/A |
M |
Blood |
413,568 |
178 |
22.9 |
CHORI |
| Corn Borer, European |
Ostrinia nubilalis |
Insect |
500 |
ON_Ba |
Available |
|
M/F |
Pupae |
36,864 |
130 |
10.0 |
AGI/CUGI |
| Deer, Chinese Muntjac |
Muntiacus reevesi reevesi |
Mammal |
3,000 |
CHORI-245 |
Available |
|
|
Testis |
192,933 |
170 |
11.5 |
CHORI |
| Deer, Indian Muntjac |
Muntiacus muntjac vaginalis |
Mammal |
3,000 |
CHORI-244 |
Available |
|
|
Blood |
216,384 |
160 |
|
CHORI |
| Dinoflagellate |
Symbiodinium clade B, isolated montastrea faveolata |
Alveolate |
2,500 |
|
In Progress |
|
|
|
166,667 |
150 |
10 |
AGI/CUGI |
| Dog, Boxer |
Canis familiaris |
Mammal |
3,000 |
CHORI-82 |
Available |
N/A |
F |
Blood |
|
185 |
10 |
CHORI |
| Echidna |
Tachyglossus aculeatus |
Mammal |
3,000 |
TA_Ba |
Available |
N/A |
M |
Liver/spleen |
210,048 |
145 |
>10.0 |
AGI/CUGI |
| Elephant, African |
Loxodonta africana |
Mammal |
3,000 |
VMRC-15 |
Available |
Wild-caught |
M |
Blood |
230,396 |
142 |
10 |
BRI |
| Ferret, Domestic |
Mustela putorius furos |
Mammal |
3,000 |
CHORI-237 |
Available |
|
|
Fetus, Internal Organs |
202,752 |
152 |
10.3 |
CHORI |
| Finch, Zebra |
Taeniopygia guttata |
Bird |
1,900 |
TG_Ba |
Available |
|
F |
Liver |
147,456 |
134 |
10.2 |
AGI/CUGI |
| Fish, Ice |
Chaenocephalus aceratus |
Fish |
1,800 |
VMRC-21 |
Available |
Wild-caught |
|
Blood |
122,573 |
168 |
10.0 |
BRI |
| Fish, Swordtail |
Xiphophorus helleri |
Fish |
900 |
VMRC-27 |
Available |
|
M |
Blood |
73,728 |
155 |
10 |
BRI |
| Fish, Yellowbelly Rockcod |
Notothenia corriceps |
Fish |
1,020 |
VMRC-19 |
Available |
Wild-caught |
|
Blood |
101,745 |
136 |
10.0 |
BRI |
| Fly, Fruit |
Drosophila hydei |
Insect |
|
|
In Progress |
|
M/F |
Embryos |
|
|
|
AGI/CUGI |
| Fly, Fruit |
Drosophila littoralis |
Insect |
|
|
In Progress |
|
M/F |
Embryos |
|
|
|
AGI/CUGI |
| Fly, Fruit |
Drosophila mercatorum |
Insect |
169 |
DM_Ba |
Available |
|
M/F |
Embryos |
18432 |
150 |
16.3 |
AGI/CUGI |
| Fly, Fruit |
Drosophila mimica |
Insect |
|
|
In Progress |
|
|
|
|
|
|
AGI/CUGI |
| Fly, Fruit |
Drosophila grimshawi |
Insect |
240 |
DG_Ba |
Available |
|
M/F |
Embryos |
18432 |
135 |
10.5 |
AGI/CUGI |
| Fly, Fruit |
Drosophila equinoxialis |
Insect |
|
|
In Progress |
|
|
|
|
|
|
AGI/CUGI |
| Fly, Fruit |
Drosophila erecta |
Insect |
152 |
DE_TBa |
Available |
|
M/F |
Embryos |
18,432 |
152 |
18.0 |
AGI/CUGI |
| Fly, Fruit |
Drosophila annanassae |
Insect |
376 |
DA_Ba |
Available |
|
M/F |
Embryos |
36,864 |
150 |
29.0 |
AGI/CUGI |
| Fly, Fruit |
Drosophila americana |
Insect |
145 |
DA_ABa |
Available |
|
M/F |
Embryos |
11520 |
130 |
10.3 |
AGI/CUGI |
| Fly, Fruit |
Drosophila miranda |
Insect |
|
|
In Progress |
|
|
|
|
|
|
AGI/CUGI |
| Fly, Fruit |
Drosophila yakuba |
Insect |
164 |
DY_Ba |
Available |
|
M/F |
Embryos |
11520 |
150 |
10.4 |
AGI/CUGI |
| Fly, Fruit |
Drosophila willistoni |
Insect |
251 |
DW_Ba |
Available |
|
M/F |
Embryos |
18432 |
140 |
11.0 |
AGI/CUGI |
| Fly, Fruit |
Drosophila mojavensis |
Insect |
376 |
DM_CBa |
Available |
|
M/F |
Embryos |
30,720 |
140 |
21.0 |
AGI/CUGI |
| Fly, Fruit |
Drosophila novamexicana |
Insect |
155 |
DN_Ba |
Available |
|
M/F |
Embryos |
18432 |
160 |
19.0 |
AGI/CUGI |
| Fly, Fruit |
Drosophila persimilis |
Insect |
176 |
DP_Ba |
Available |
|
M/F |
Embryos |
18432 |
150 |
15.7 |
AGI/CUGI |
| Fly, Fruit |
Drosophila pseudoobscura |
Insect |
180 |
CHORI-226 |
Available |
MV2-25 |
|
|
36,462 |
125 |
25.6 |
CHORI |
| Fly, Fruit |
Drosophila repleta |
Insect |
|
|
In Progress |
|
|
|
|
|
|
AGI/CUGI |
| Fly, Fruit |
Drosophila sechellia |
Insect |
169 |
DS_Ba |
Available |
|
M/F |
Embryos |
18432 |
140 |
15.1 |
AGI/CUGI |
| Fly, Fruit |
Drosophila silvestris |
Insect |
|
|
In Progress |
|
|
|
|
|
|
AGI/CUGI |
| Fly, Fruit |
Drosophila simulans |
Insect |
|
|
In Progress |
|
|
|
|
|
|
AGI/CUGI |
| Fly, Fruit |
Drosophila virilis |
Insect |
753 |
DV_VBa |
Available |
|
M/F |
Embryos |
55,296 |
150 |
22.0 |
AGI/CUGI |
| Fly, Tsetse |
Glossina morsitans |
Insect |
600 |
VMRC-29 |
Seeking Sample |
|
|
Pupae or Larvae |
51,979 |
138 |
13.0 |
BRI |
| Frog, Clawed |
Xenopus laevis |
Amphibian |
3,100 |
CHORI-219 |
Available |
J (MHC inbred) |
F |
Kidney |
216,229 |
140 |
9.8 |
CHORI |
| Frog, Clawed |
Xenopus tropicalis |
Amphibian |
1,700 |
CHORI-216 |
Available |
N/A |
F |
Blood |
162,184 |
175 |
6.6 |
CHORI |
| Galago |
Otolemur garnetti |
Mammal |
3,000 |
CHORI-256 |
Available |
N/A |
|
Kidney |
221,184 |
170 |
12.5 |
CHORI |
| Gibbon |
Nomascus leucogenys |
Mammal |
3,000 |
CHORI-271 |
Available |
N/A |
F |
Blood |
182,163 |
173 |
|
CHORI |
| Gorilla |
Gorilla gorilla |
Mammal |
3,000 |
CHORI-255 |
Available |
N/A |
|
Blood |
220,000 |
185 |
13.5 |
CHORI |
| Guinea Pig |
Cavia porcellus |
Mammal |
3,000 |
CHORI-234 |
Available |
"2N" inbred |
F |
Kidney |
202,733 |
160 |
10.8 |
CHORI |
| Haploid Hydatidiform mole |
Homo sapiens |
Mammal |
3,000 |
CHORI-17 |
Available |
|
|
Cell Line |
|
180 |
|
CHORI |
| Hydra |
Hydra magnipapillata |
Cnidarian |
|
|
In Progress |
105 |
|
|
86,400 |
|
10 |
CHORI |
| Hyrax, Rock |
Procavia capensis |
Mammal |
|
|
In Progress |
|
F |
|
200,000 |
|
10 |
CHORI |
| Lemur, Black |
Eulemur macaco |
Mammal |
3,000 |
CHORI-273 |
Available |
N/A |
F |
Kidney |
193,767 |
190 |
10.0 |
CHORI |
| Lemur, Mouse |
Microcebus murinus |
Mammal |
3,000 |
CHORI-257 |
Available |
N/A |
|
Spleen |
220,000 |
214 |
15.0 |
CHORI |
| Marmoset |
Callithrix jacchus |
Mammal |
3,000 |
CHORI-259 |
Available |
N/A |
M |
Kidney |
214,000 |
170 |
|
CHORI |
| Megabat |
Cynoterus sp. |
Mammal |
|
|
Available |
|
F |
|
200,000 |
|
10 |
CHORI |
| Monkey, Black-and-white Colobus |
Colobus guereza |
Mammal |
3,000 |
CHORI-272 |
Available |
|
|
Blood |
178,738 |
170 |
10.4 |
CHORI |
| Monkey, Owl |
Aotus trivirgatus |
Mammal |
3,000 |
CHORI-258 |
Available |
N/A |
|
|
198,000 |
165 |
10.9 |
CHORI |
| Monkey, Squirrel |
Saimiri sp. |
Mammal |
3,000 |
CHORI-254 |
Available |
N/A |
|
Liver |
179,591 |
185 |
11.3 |
CHORI |
| Monkey, Vervet |
Cercopithecus aethiops |
Mammal |
3,000 |
CHORI-252 |
Available |
N/A |
M |
Blood |
201,000 |
160 |
10.8 |
CHORI |
| Moth, Noctuid |
Heliothis subflexa |
Insect |
500 |
HS_Ba |
Available |
|
M/F |
Pupae |
36,864 |
131 |
10.0 |
AGI/CUGI |
| Mouse, Deer |
Peromyscus maniculatus |
Mammal |
251 |
CHORI-233 |
Available |
|
F |
Kidney |
212,916 |
182.5 |
9.8 |
CHORI |
| Mouse, House |
Mus m. castenus CAST/Ei |
Mammal |
3,000 |
CHORI-26 |
Available |
CAST/Ei |
M |
Kidney |
177,886 |
170 |
10.0 |
CHORI |
| Mouse, House |
Mus musculus A/J |
Amphibian |
3,000 |
CHORI-27 |
Available |
A/J |
M |
Liver |
197,082 |
162 |
10.6 |
CHORI |
| Mouse, House |
Mus musculus AKR/J |
Mammal |
3,000 |
CHORI-33 |
Available |
AKR/J |
|
Kidney |
155,819 |
175 |
|
CHORI |
| Mouse, House |
Mus musculus BALB/cByJ |
Mammal |
3,000 |
CHORI-28 |
Available |
BALB/cByJ |
M |
Kidney |
201,534 |
170 |
11.0 |
CHORI |
| Mouse, House |
Mus musculus C3H/HeJ |
Mammal |
3,000 |
CHORI-34 |
Available |
C3H/HeJ |
|
Kidney |
161,923 |
164 |
10.2 |
CHORI |
| Mouse, House |
Mus musculus C57BL/6J |
Mammal |
3,000 |
CHORI-36 |
Available |
C57CL/6J |
M |
|
189,575 |
170 |
11.2 |
CHORI |
| Mouse, House |
Mus musculus DBA/2J |
Mammal |
3,000 |
MM_DBa |
Available |
DBA/2J |
M |
Liver |
215,040 |
143 |
10.3 |
AGI/CUGI |
| Mouse, House |
Mus spretus SPRET/Ei |
Mammal |
3,000 |
CHORI-35 |
Available |
SPRET/Ei |
|
Kidney |
164,710 |
181 |
11.9 |
CHORI |
| Oikopleura |
Oikopleura dioica |
Chordate |
70 |
CHORI-304 |
Seeking Sample |
|
|
|
|
|
|
CHORI |
| Opossum, Laboratory (Female) |
Monodelphia domestica |
Mammal |
4,170 |
VMRC-18 |
Available |
|
F |
Brain |
364,800 |
175 |
15.0 |
BRI |
| Opossum, Laboratory (Male) |
Monodelphia domestica |
Mammal |
4,170 |
VMRC-6 |
Available |
|
M |
Blood |
276,480 |
155 |
10.0 |
BRI |
| Orangutan, Sumatran (female) |
Pongo pygmaeus pygmaeus |
Mammal |
3,000 |
CHORI-276 |
Available |
N/A |
F |
Blood |
202,752 |
200 |
13.5 |
CHORI |
| Orangutan, Sumatran (male) |
Pongo pygmaeus pygmaeus |
Mammal |
3,000 |
CHORI-253 |
Available |
N/A |
M |
Blood |
198,000 |
177 |
11.7 |
CHORI |
| Oxytricha |
Oxytricha trifallaxmicronucleus |
Ciliate |
500 |
|
Seeking Sample |
|
|
|
|
|
|
CHORI |
| Oyster, Eastern |
Crassotrea virginica |
Mollusk |
700 |
CV_Ba |
Available |
N/A |
M |
Sperm |
55,296 |
134 |
10.3 |
AGI/CUGI |
| Oyster, Pacific |
Crassotrea gigas |
Mollusk |
900 |
CG_Ba |
Available |
N/A |
M |
Sperm |
73,728 |
150 |
12.2 |
AGI/CUGI |
| Pangolin, Chinese |
Manis pentadactyla |
Mammal |
|
|
In Progress |
|
F |
|
200,000 |
|
10 |
CHORI |
| Platypus, Duck-billed |
Ornithorhyncus anatinus |
Mammal |
3,000 |
OA_Bb |
Available |
|
M |
|
230,400 |
143 |
10.8 |
AGI/CUGI |
| Platypus, Duck-billed |
Ornithorhyncus anatinus |
Mammal |
3,000 |
CHORI-236 |
Available |
|
F |
Spleen |
218,309 |
147 |
10.7 |
CHORI |
| Rat |
Rattus norvegicus F344 |
Mammal |
3,000 |
RN_Ba |
Available |
F344 |
M |
Liver |
202,752 |
160 |
11.0 |
AGI/CUGI |
| Rat |
Rattus norvegicus SS |
Mammal |
3,000 |
VMRC-11 |
Available |
SS/JrHsd/Mcwi |
M |
Brain |
202,748 |
147 |
10.0 |
BRI |
| Rat |
Rattus norvegicus FHH |
Mammal |
3,000 |
VMRC-17 |
Available |
FHH/Eur |
M |
Kidney |
221,184 |
143 |
10.0 |
BRI |
| Shark, Nurse |
Ginglymostoma cirratum |
Elasmobranch |
4,000 |
GC_Ba |
Available |
N/A |
F |
Blood |
313,344 |
>130 |
10.2 |
AGI/CUGI |
| Shrew, European Common |
Sorex araneus |
Mammal |
3,000 |
SA_Ba |
Available |
N/A |
M |
Liver/spleen |
239,616 |
140 |
10.0 |
AGI/CUGI |
| Shrew, Lesser Tree |
Tupaia minor/ Tupaia belangeri |
Mammal |
3,000 |
|
Seeking Sample |
|
|
|
|
|
|
|
| Snail |
Biomphalaria glabrata |
Mollusk |
931 |
BG_BBa |
Available |
N/A |
M/F |
Ovotestis |
61,824 |
144 |
10.0 |
AGI/CUGI |
| Squirrel, Thirteen-lined ground |
Spermophilus tridecemlineatus |
Mammal |
4,100 |
VMRC-20 |
Available |
|
F |
Brain |
276,480 |
160 |
10 |
BRI |
| Stickleback, Three-spined |
Gasterosteus aculeatus |
Fish |
700 |
VMRC-26 |
Available |
|
F |
|
96,000 |
165 |
20.0 |
BRI |
| Stickleback, Three-spined |
Gasterosteus aculeatus |
Fish |
700 |
VMRC-28 |
Available |
|
F |
|
57,600 |
145 |
12.0 |
BRI |
| Swallowtail, Easter Tiger |
Papilio glaucus |
Insect |
440 |
PG_Ba |
Available |
|
M/F |
Pupae |
36,864 |
135 |
11.0 |
AGI/CUGI |
| Tarsier |
Tarsius syrichta |
Mammal |
5,300 |
CHORI-274 |
Seeking Sample |
|
|
|
|
|
|
CHORI |
| Tenrec, Lesser Hedgehog |
Echinops telfairi |
Mammal |
3,000 |
CHORI-238 |
Available |
N/A |
F |
Kidney/Liver |
202,752 |
175 |
11.8 |
CHORI |
| Wallaby, Tammar |
Macropus eugenii |
Mammal |
3,500 |
ME_KBa |
Available |
N/A |
M |
Pouch Young Cells |
239,616 |
166 |
11.4 |
AGI/CUGI |
| Worm, Acorn |
Saccoglossus kowalevskii |
Hemichordate |
1,000 |
SK_Ba |
Available |
N/A |
M |
Sperm |
110,592 |
130 |
15.3 |
AGI/CUGI |
For additional information about the BAC library construction program, please contact:
Kris Wetterstrand, M.S.
Senior Program Analyst, Comparative Genomics
National Human Genome Research Institute
National Institutes of Health
5635 Fishers Lane Suite 4076, MSC 9305
Bethesda, MD 20892-9305
FedEx/UPS/Courier should use:
Rockville, MD 20852
Phone: (301) 496-7531
Fax: (301) 480-2770
E-mail: wettersk@mail.nih.gov
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Last Updated: June 2005
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