Approved Sequencing Targets

National Human Genome Research Institute

National Institutes of Health
U.S. Department of Health and Human Services


Approved Sequencing Targets

Annual Receipt Dates are: January 10 and July 10

Status Approved Sequencing Targets

Please note: Actual projects approved for sequencing may be different from what is in the detailed proposals. To sort the table by column, click on the link in the header.

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Project Name Common Name Scientific Name Taxonomy Target Sequencing
Group
Project Status
Black Yeasts* Black Yeast Cladophialophora bantiana Bacteria Draft Assembly BI Not Started
Black Yeasts* Black Yeast Cladophialophora carrionii Bacteria Draft Assembly BI Not Started
Black Yeasts* Black Yeast Cladophialophora psammophila Bacteria Draft Assembly BI Not Started
Population genomic analysis of the human pathogenic fungus Cyptococcus neoformans* PDF icon Cyptococcus (multiple variety) Cyptococcus neoformans var. grubii Bacteria Resequencing BI In Process
Population genomic analysis of the human pathogenic fungus Cyptococcus neoformans* PDF icon Cyptococcus (multiple variety) Cyptococcus neoformans var. neoformans Bacteria Draft Assembly BI In Process
Sequencing the Human Microbiome Pilot Metagenomic Sequencing of Human Intestinal Microbiome Bacteria Metagenomic sequencing WUGSC
BCM-HGSC
BI-MIT
In Process
200 Mammals (Phase 1)* PDF icon Screaming hairy armadillo Chaetophractus vellerosus Bacteria Draft Assembly BI
G10K Mammalian Community
Completed
Sequencing the Human Microbiome Sequencing of Cultivable Microbes from Human Gut Bacteria Draft reference genomes of 100 bacteria and archea strains from human gut WUGSC In Process
Sequencing the Human Microbiome Sequencing of Cultivable Microbes from Human Gut and Vagina Bacteria Draft reference genomes of 200 bacteria and archea strains from human WUGSC
BCM-HGSC
BI-MIT
In Process
Fungal Genome Initiative II Agaricus bisporus Fungus Draft Assembly BI Completed
Origins of Multicellularity Project Allomyces macrogynus Fungus Draft Assembly BI Completed
Fungal Genome Initiative I Aspergillus nidulans Fungus Draft Assembly BI Completed
Fungal Genome Initiative II Candida albicans Fungus Draft Assembly BI Completed
Fungal Genome Initiative III Candida guilliermondii Fungus Draft Assembly BI Completed
Fungal Genome Initiative III Candida lusitaniae Fungus Draft Assembly BI Completed
Fungal Genome Initiative II Candida tropicalis Fungus Draft Assembly BI Completed
Fungal Genome Initiative III Chaetomium globosum Fungus Draft Assembly BI Completed
Fungal Genome Initiative I Coccidioides immitis Fungus Draft Assembly BI Completed
Fungal Genome Initiative I Coprinus cinereus Fungus Draft Assembly BI Completed
Fungal Genome Initiative III Cryptococcus neoformans, serotype B Fungus Draft Assembly BI Completed
Fungal Genome Initiative I Cryptococcus neoformans, serotype A Fungus Draft Assembly BI Completed
Fungal Genome Initiative III Histoplasma capsulatum Fungus Draft Assembly BI Completed
Fungal Genome Initiative II Lodderomyces elongisporus Fungus Draft Assembly BI Completed
Dermatophyte fungi PDF icon Microsporum canis Fungus Draft Assembly BI Completed
Dermatophyte fungi PDF icon Microsporum gypseum Fungus Draft Assembly BI Completed
Origins of Multicellularity Project Mortierella verticulata Fungus Low Coverage (~2X) BI In Process
Fungal Genome Initiative I Pneumocystis carinii (human and mouse pathogens) Fungus Draft Assembly BI On Hold
Fungal Genome Initiative III Podospora anserina Fungus Draft Assembly BI Completed
Fungal Genome Initiative I Rhizopus oryzae Fungus Draft Assembly BI Completed
Fungal Genome Initiative II Saccharomyces cerevisiae RM11-1A Fungus Draft Assembly BI Completed
Fungal Genome Initiative IV Schizosaccharomyces japonicus Fungus Draft Assembly BI Completed
Fungal Genome Initiative IV Schizosaccharomyces octosporus Fungus Draft Assembly BI Completed
Origins of Multicellularity Project Spizellomyces punctatus Fungus Low Coverage (~2X) BI Completed
Dermatophyte fungi PDF icon Trichophyton equinum Fungus Draft Assembly BI Completed
Dermatophyte fungi PDF icon Trichophyton rubram Fungus Draft Assembly BI Completed
Dermatophyte fungi PDF icon Trichophyton tonsurans Fungus Draft Assembly BI Completed
Fungal Genome Initiative III Uncinocarpus reesei Fungus Draft Assembly BI Completed
Fungal Genome Initiative I Ustilago maydis Fungus Draft Assembly BI Completed
Black Yeasts* Black Yeast Capronia coronata / Exophiala Fungus Draft Assembly BI Not Started
Black Yeasts* Black Yeast Capronia epimyces Fungus Draft Assembly BI Not Started
Black Yeasts* Black Yeast Cladophialophora yegresii Fungus Draft Assembly BI Not Started
Black Yeasts* Black Yeast Coniosporium apollinis Fungus Draft Assembly BI Not Started
Black Yeasts* Black Yeast Coniosporium epidermidis Fungus Draft Assembly BI Not Started
Black Yeasts* Black Yeast Exophiala aquamarina Fungus Draft Assembly BI Not Started
Black Yeasts* Black Yeast Exophiala dermatitidis Fungus Draft Assembly BI Not Started
Black Yeasts* Black Yeast Exophiala spinifera Fungus Draft Assembly BI Not Started
Black Yeasts* Black Yeast Fonsecaea pedrosoi Fungus Draft Assembly BI Not Started
Black Yeasts* Black Yeast Ochroconis gallopava Fungus Draft Assembly BI Not Started
Black Yeasts* Black Yeast Phialophora europaea Fungus Draft Assembly BI Not Started
Black Yeasts* Black Yeast Rhinocladiella mackenziei Fungus Draft Assembly BI Not Started
Fungal Genome Initiative IV Chytrid Fungus Batrachochytrium dendrobatidis Fungus Draft Assembly BI Completed
Population genomic analysis of the human pathogenic fungus Cyptococcus neoformans* PDF icon Cyptococcus (multiple variety) Cyptococcus gatti Fungus Draft Assembly BI In Process
Population genomic analysis of the human pathogenic fungus Cyptococcus neoformans* PDF icon Cyptococcus (multiple variety) Cyptococcus neoformans var. grubii Fungus Draft Assembly BI In Process
Population genomic analysis of the human pathogenic fungus Cyptococcus neoformans* PDF icon Cyptococcus (multiple variety) Hybrids Fungus Draft Assembly BI In Process
Population genomic analysis of the human pathogenic fungus Cyptococcus neoformans* PDF icon Cyptococcus (multiple variety) Other Tremellales species Fungus Draft Assembly BI In Process
Fungal Genome Initiative White-Nose Fungus Geomyces destructans Fungus Draft Assembly BI Completed
Multiple Strains of Yeast PDF icon Yeast Saccharomyces cerevisiae Fungus 10 strains to full draft, 2-fold coverage up to 25 strains coverage WUGSC In Process
Yeast Yeast Saccharomyces kluyveri Fungus Draft Assembly WUGSC Completed
Origins of Multicellularity Project Amastigomonas sp. Protist Draft Assembly BI Completed
Origins of Multicellularity Project Amoebidium parasiticum Protist Low Coverage (~2X) BI In Process
Origins of Multicellularity Project Capsaspora owczarzaki Protist Draft Assembly BI Completed
Origins of Multicellularity Project Nuclearia simplex Protist Draft Assembly BI Cancelled, replaced by Ministeria vibrans
Origins of Multicellularity Project Schaeroforma arctica Protist Draft Assembly BI In Process
Origins of Multicellularity Project Stephanoeca or Acanthocoepis sp. Protist Low Coverage (~2X) BI Cancelled, replaced by Thecamonas trahens
Pathogenomics of Trypanosomatid parasites Protist 10X coverage of 25 species/strains, finishing of 6, cDNAs for 8 WUGSC In Process
Comprehensive Sequencing Proposal for Plasmodium Protist Draft sequence and ESTs of multiple isolates of P. falciparum, P. vivax, and related species for comparative and model system studies BI In Process
Comparative Analysis of Plasmodium Vivax Protist 8X coverage of 6 species/strains; 40k ESTs BI In Process
Amoeba PDF icon Amoeba Acanthamoeba castellanii Protist Draft Assembly BCM-HGSC In Process
Choanoflagellate Choanoflagellate Monosiga ovata Protist Draft Assembly WUGSC Not Started
Slime Mold Slime Mold Physarum polycephalum Protist Draft Assembly WUGSC In Process
Spirotrich Ciliate PDF icon Spirotrich Ciliate Oxytricha trifallax [macronucleus] Protist Draft Assembly WUGSC In Process
Spirotrich Ciliate PDF icon Spirotrich Ciliate Oxytricha trifallax [micronucleus + equivalent macronucleus sequences] Protist Draft Assembly Not Started
Tetrahymena PDF icon Tetrahymena Tetrahymena thermophila Protist Draft Assembly BI In Process
Origins of Multicellularity Project Ministeria vibrans Protist Low Coverage (~2X) BI In Process
Origins of Multicellularity Project Salpingoeca rosetta Protist Draft Assembly BI Completed
Origins of Multicellularity Project Thecamonas trahens Protist Low Coverage (~2X) BI Completed
Nematode PDF icon Heterorhabditis bacteriophora Invertebrate Draft Assembly WUGSC Completed
Nematode PDF icon Pristionchus pacificus Invertebrate Draft Assembly WUGSC In Process
Trichinosis vector (human) Trichinella spiralis Invertebrate Draft Assembly WUGSC Completed
Trichinosis vector (human) Trichinella spiralis Invertebrate Genome refinement WUGSC In Process
Genome Analysis of Vectorial Capacity in Major Anopheles Vectors of Malaria Parasites Invertebrate High quality assembly for 13 species; 200,000 EST of each species BI Not Started
Ecdysozoan Sequencing PDF icon Amphipod Crustacean Jassa slatteryi Invertebrate Draft Assembly BI Not Started
Pea Aphid PDF icon Aphid, Pea Acyrothosyphon pisum Invertebrate Draft Assembly BCM-HGSC Completed
Beetle, Red Flour Beetle, Red Flour Tribolium castaneum Invertebrate Draft Assembly BCM-HGSC Completed
Bug (Chagas' Vector) PDF icon Bug (Chagas' Vector) Rhodnius prolixus Invertebrate Draft Assembly WUGSC Completed
Ecdysozoan Sequencing PDF icon Centipede, Geophilimorph Strigamia maritima Invertebrate Draft Assembly BCM-HGSC In Process
Ecdysozoan Sequencing PDF icon Chelicerate (Horseshoe Crab) Limulus polyphemus Invertebrate Draft Assembly WUGSC In Process
Drug Resistant Parasitic Nematode * PDF icon Drug Resistant Parasitic Nematode Necator americanus Invertebrate Draft Assembly of Drug-Resistant Isolates WUGSC Not Started
Drug Resistant Parasitic Nematode * PDF icon Drug Resistant Parasitic Nematode Telodorsagia circumcincta Invertebrate Draft Assembly of Drug-Resistant Isolates WUGSC Not Started
Freshwater Polyp Freshwater Polyp Hydra magnipapillata Invertebrate Draft Assembly JCVI In Process
Fruit Fly Fruit Fly Drosophila ananassae Invertebrate Draft Assembly Agencourt Completed
modENCODE Comparative Genomics PDF icon Fruit Fly Drosophila biarmipes Invertebrate Draft Assembly BCM-HGSC Not Started
modENCODE Comparative Genomics PDF icon Fruit Fly Drosophila bipectinata Invertebrate Draft Assembly BCM-HGSC Not Started
modENCODE Comparative Genomics PDF icon Fruit Fly Drosophila elegans Invertebrate Draft Assembly BCM-HGSC Not Started
Fruit Fly Fruit Fly Drosophila erecta Invertebrate Draft Assembly Agencourt Completed
modENCODE Comparative Genomics PDF icon Fruit Fly Drosophila eugracilis Invertebrate Draft Assembly BCM-HGSC Not Started
modENCODE Comparative Genomics PDF icon Fruit Fly Drosophila ficusphila Invertebrate Draft Assembly BCM-HGSC Not Started
Fruit Fly Fruit Fly Drosophila grimshawi Invertebrate Draft Assembly Agencourt Completed
modENCODE Comparative Genomics PDF icon Fruit Fly Drosophila kikkawai Invertebrate Draft Assembly BCM-HGSC Not Started
Fruit Fly Fruit Fly Drosophila mauritiana Invertebrate Feasibility sequencing** WUGSC Completed
modENCODE Comparative Genomics PDF icon Fruit Fly Drosophila melanogaster, OregonR Invertebrate Draft Assembly BCM-HGSC Not Started
Fruit Fly Fruit Fly Drosophila melanogaster Invertebrate Draft Assembly BDGP
BCM-HGSC
Completed
Drosophila Genetic Reference Panel (Revised) Fruit Fly Drosophila melanogaster Invertebrate 10-12 X 454 coverage and 6 x Solexa coverage of 192 lines BCM-HGSC In Process
Fruit Fly Fruit Fly Drosophila mojavensis Invertebrate Draft Assembly Agencourt Completed
Fruit Fly Fruit Fly Drosophila persimilis Invertebrate Draft Assembly BI Completed
Fruit Fly Fruit Fly Drosophila pseudoobscura Invertebrate Draft Assembly BCM-HGSC Completed
modENCODE Comparative Genomics PDF icon Fruit Fly Drosophila rhopaloa Invertebrate Draft Assembly BCM-HGSC Not Started
Fruit Fly Fruit Fly Drosophila sechellia Invertebrate Draft Assembly BI Completed
Fruit Fly Fruit Fly Drosophila simulans Invertebrate Draft Assembly WUGSC Completed
modENCODE Comparative Genomics PDF icon Fruit Fly Drosophila takahashii Invertebrate Draft Assembly BCM-HGSC Not Started
Fruit Fly Fruit Fly Drosophila virilis Invertebrate Draft Assembly Agencourt Completed
Fruit Fly Fruit Fly Drosophila willistoni Invertebrate Draft Assembly JCVI Completed
Fruit Fly Fruit Fly Drosophila yakuba Invertebrate Draft Assembly WUGSC Completed
Honey Bee Honey Bee Apis mellifera Invertebrate Genome refinement BCM-HGSC Completed
Honey Bee Honey Bee Apis mellifera Invertebrate Draft Assembly BCM-HGSC In Process
Louse, Body PDF icon Louse, Body Pediculus humanus Invertebrate Draft Assembly JCVI Completed
Mosquito PDF icon Mosquito Anopheles gambiae, M strain Invertebrate Draft Assembly WUGSC Completed
Mosquito PDF icon Mosquito Anopheles gambiae, S strain Invertebrate Draft Assembly JCVI In Process
Trichoplax Placazoan Trichoplax adhaerens Invertebrate Draft Assembly WUGSC Sequenced by DOE
Planarian Planarian Schmidtea mediterranea Invertebrate Draft Assembly WUGSC Completed
Roundworm Roundworm Caenorhabditis brenneri Invertebrate Genome Refinement WUGSC In Process
Roundworm Roundworm Caenorhabditis brenneri Invertebrate Draft Assembly WUGSC In Process
Roundworm Roundworm Caenorhabditis briggsae Invertebrate Draft Assembly WUGSC In Process
Roundworm Roundworm Caenorhabditis elegans Invertebrate Finished Sequence WUGSC
SI
Completed
Roundworm Roundworm Caenorhabditis japonica Invertebrate Draft Assembly WUGSC In Process
Roundworm Roundworm Caenorhabditis remanei Invertebrate Draft Assembly WUGSC In Process
Roundworm Roundworm Caenorhabditis remanei Invertebrate Genome refinement WUGSC Completed
modENCODE Comparative Genomics PDF icon Roundworm Caenorhabditis sp.11 (JU1373) Invertebrate Draft Assembly WUGSC In Process
modENCODE Comparative Genomics PDF icon Roundworm Caenorhabditis sp.7 (JU1199) Invertebrate Draft Assembly WUGSC In Process
modENCODE Comparative Genomics PDF icon Roundworm Caenorhabditis sp.9 (JU1325) Invertebrate Draft Assembly WUGSC In Process
Sand Flies PDF icon Sand Fly Lutzomiya longipalpis Invertebrate BAC library construction; BAC-end sequencing WUGSC
BCM-HGSC
In Process
Sand Flies PDF icon Sand Fly Phlebotomus papatasi Invertebrate BAC library construction; BAC-end sequencing WUGSC
BCM-HGSC
In Process
Sea Slug PDF icon Sea Slug Aplysia californica Invertebrate Draft Assembly BI In Process
Sea Squirt Sea Squirt Ciona savignyi Invertebrate Draft Assembly BI Completed
Echinoderm Sequencing for Genome Regulatory Network Analysis PDF icon Sea Star Asterina miniata Invertebrate Draft Assembly BCM-HGSC In Process
Echinoderm Sequencing for Genome Regulatory Network Analysis PDF icon Sea Urchin Lytechinus variegtus Invertebrate Draft Assembly BCM-HGSC In Process
Sea Urchin Sea Urchin Strongylocentrotus purpuratus Invertebrate Draft Assembly BCM-HGSC Completed
Snail, Freshwater PDF icon Snail, Freshwater Biomphalaria glabrata (schistosomiasis vector) Invertebrate Draft Assembly WUGSC In Process
Strongylid Nematode PDF icon Strongylid Nematode Ancylostoma caninum Invertebrate Draft Assembly WUGSC Completed
Strongylid Nematode PDF icon Strongylid Nematode Cooperia oncophora Invertebrate Draft Assembly WUGSC In Process
Strongylid Nematode PDF icon Strongylid Nematode Dictyocaulus viviparus Invertebrate Draft Assembly WUGSC In Process
Strongylid Nematode PDF icon Strongylid Nematode Necator americanus Invertebrate Draft Assembly WUGSC Completed
Strongylid Nematode PDF icon Strongylid Nematode Nematodirus battus Invertebrate Draft Assembly WUGSC In Process
Strongylid Nematode PDF icon Strongylid Nematode Nippostrongylus brasiliensis Invertebrate Draft Assembly WUGSC In Process
Strongylid Nematode PDF icon Strongylid Nematode Oesophagostomum dentatum Invertebrate Draft Assembly WUGSC In Process
Strongylid Nematode PDF icon Strongylid Nematode Ostertagia ostertagii Invertebrate Draft Assembly WUGSC In Process
Strongylid Nematode PDF icon Strongylid Nematode Teladorsagia circumcincta Invertebrate Draft Assembly WUGSC In Process
Strongylid Nematode PDF icon Strongylid Nematode Trichostrongylus vitrinus Invertebrate Draft Assembly WUGSC In Process
Ecdysozoan Sequencing PDF icon Tardigrade Hypsibius dujardini Invertebrate Draft Assembly BI Not Started
Wasp, Parasitoid PDF icon Wasp, Parasitoid Nasonia giraulti Invertebrate Draft Assembly BCM-HGSC Completed
Wasp, Parasitoid PDF icon Wasp, Parasitoid Nasonia longicornis Invertebrate Draft Assembly BCM-HGSC Completed
Wasp, Parasitoid PDF icon Wasp, Parasitoid Nasonia vitripennis Invertebrate Draft Assembly BCM-HGSC Completed
Worm, Acorn Worm, Acorn Saccoglossus kowalesvskii Invertebrate Draft Assembly BCM-HGSC In Process
Ecdysozoan Sequencing PDF icon Worm, Priapulid Priapulus caudatus Invertebrate Draft Assembly WUGSC In Process
Genome Analysis of Major Tick and Mite Vectors of Human Pathogens Invertebrate Draft genome assembly (high coverage) of 2 Acaries and transcriptome sequencing of 8 Acaries NIAID Not Started
Glossina (Tsetse Fly) Genome Projects Invertebrate Draft genome assembly and transcriptome sequencing of five Glossina genomes and two comparative genomes; low coverage genome sequencing of ~12 field populations. BI Not Started
Food-Borne Tremadiases Invertebrate Draft genome assembly (high coverage) and transcriptome sequencing of 14 FBT genomes that infect various body sites WUGSC Not Started
Tilapia Cichlid PDF icon Astatotilapia burtoni Non-mammalian Vertebrate Low Coverage BI In Process
Tilapia Cichlid PDF icon Metriaclima zebra Non-mammalian Vertebrate Low Coverage BI In Process
Tilapia Cichlid PDF icon Oreochromis niloticus Non-mammalian Vertebrate Draft Assembly BI In Process
Tilapia Cichlid PDF icon Paralibidichromis chilotes Non-mammalian Vertebrate Low Coverage BI In Process
Chicken Chicken Gallus gallus Non-mammalian Vertebrate Draft Assembly WUGSC Completed
Chicken Chicken Gallus gallus Non-mammalian Vertebrate Genome refinement WUGSC In Process
Evolution of the Proteome Coelacanth Latimeria chalumnae Non-mammalian Vertebrate Draft Assembly BI In Process
Evolution of the Proteome Gar, Spotted Lepisosteus oculatus Non-mammalian Vertebrate Draft Assembly BI In Process
Evolution of the Proteome Hagfish Eptatretus burgeri Non-mammalian Vertebrate Draft Assembly Not Started
Lamprey, Sea Lamprey, Sea Petromyzon marinus Non-mammalian Vertebrate Draft Assembly WUGSC In Process
Lizard, Anole PDF icon Lizard, Anole Anolis carolinensis Non-mammalian Vertebrate Full draft genome BI Completed
Pufferfish Pufferfish Tetraodon nigroviridis Non-mammalian Vertebrate Draft Assembly BI Completed
Elephant Shark PDF icon Shark, Elephant Callorhinchus milii Non-mammalian Vertebrate Draft Assembly WUGSC In Process
Evolution of the Proteome Skate Raja erinacea Non-mammalian Vertebrate Draft Assembly Not Started
Coelacanth/Lungfish RNA-Seq Project* Slender Lungfish or Spotted African Lungfish Protopterus dolloi Non-mammalian Vertebrate RNA sequencing of 3 lungfish tissues - brain, testis, mixed organ (RNAseq libraries at 5Gb each) - to complement 1 tissue from coelacanth BI In Process
Stickleback, Threespine Stickleback, Threespine Gasterosteus aculeatus Non-mammalian Vertebrate Draft Assembly BI In Process
Evolution of the Proteome Turtle, Painted Chrysemys picta Non-mammalian Vertebrate Draft Assembly WUGSC In Process
Zebra finch PDF icon Zebra finch Taeniopygia guttata Non-mammalian Vertebrate Draft Assembly WUGSC Completed
Zebra finch Zebra finch Taeniopygia guttata Non-mammalian Vertebrate Physical map WUGSC Completed
200 Mammals (Phase 1)* PDF icon Aardvark Orycteropus afer Mammal Draft Assembly BI
G10K Mammalian Community
Completed
Top-up of Remaining 2X Mammals Alpaca Vicugna pacos Mammal Draft Assembly WUGSC In Process
Multiple Mammalian Genomes for Comparative Annotation Alpaca Vicugna pacos Mammal Low Coverage (~2X) WUGSC Completed
Multiple Mammalian Genomes for Comparative Annotation Armadillo, Nine-Banded Dasypus novemcinctus Mammal Low Coverage (~2X) BI Completed
Multiple Mammalian Genomes for Comparative Annotation Armadillo, Nine-Banded Dasypus novemcinctus Mammal Draft Assembly BCM-HGSC In Process
Defining the Transcriptome of Nine Vertebrate Genomes Using RNA-Seq* PDF icon Armadillo, Nine-banded Dasypus novemcinctus Mammal Transcriptome BI In Process
Additional Primate Sequencing Baboon Papio hamadryas Mammal Draft Assembly BCM-HGSC In Process
Multiple Mammalian Genomes for Comparative Annotation Bat, Little Brown (Microbat) Myotis lucifugus Mammal Low Coverage (~2X) BI Completed
Multiple Mammalian Genomes for Comparative Annotation Bat, Little Brown (Microbat) Myotis lucifugus Mammal Draft Assembly BI In Process
200 Mammals (Phase 1)* PDF icon Big brown bat Eptesicus fuscus Mammal Draft Assembly BI
G10K Mammalian Community
Completed
Expanding Comparative Genomics in Nonhuman Primates* PDF icon Black and white colobus Colobus sp. Mammal Draft Assembly BCM-HGSC
G10K Mammalian Community
In Process
Bonobo PDF icon Bonobo Pan paniscus Mammal Fosmid-end Sequencing WUGSC In Process
Expanding Comparative Genomics in Nonhuman Primates* PDF icon Buff-headed capuchin Cebus xanthrosternos Mammal Draft Assembly BCM-HGSC
G10K Mammalian Community
In Process
Additional Primate Sequencing Bushbaby Otolemur garnetti Mammal Draft Assembly BI In Process
Multiple Mammalian Genomes for Comparative Annotation Bushbaby Otolemur garnetti Mammal Low Coverage (~2X) BI Completed
Defining the Transcriptome of Nine Vertebrate Genomes Using RNA-Seq PDF icon Bushbaby/Galago Otolemur garnetti Mammal Transcriptome BI In Process
200 Mammals (Phase 1)* PDF icon California leaf-nosed bat Macrotus californicus Mammal Draft Assembly BI
G10K Mammalian Community
Completed
200 Mammals (Phase 1)* PDF icon Cape golden mole Chrysochloris asiatica Mammal Draft Assembly BI
G10K Mammalian Community
Completed
Multiple Mammalian Genomes for Comparative Annotation Cat Felis catus Mammal Draft Assembly WUGSC In Process
Cat Cat Felis catus Mammal Low Coverage (~2X) Agencourt Completed
Chimpanzee Chimpanzee Pan troglodytes Mammal Draft Assembly WUGSC
BI
Completed
Chimpanzee Chimpanzee Pan troglodytes Mammal Genome refinement WUGSC In Process
200 Mammals (Phase 1)* PDF icon Chinchilla Chinchilla laniger Mammal Draft Assembly BI
G10K Mammalian Community
Completed
200 Mammals (Phase 1)* PDF icon Chinese hamster Cricetulus griseus Mammal Draft Assembly BI
G10K Mammalian Community
Completed
Cow Cow Bos taurus Mammal Draft Assembly BCM-HGSC Completed
Multiple Mammalian Y Chromosomes Cow Bos taurus Mammal Genome refinement BCM-HGSC
WUGSC
In Process
200 Mammals (Phase 1)* PDF icon Crested porcupine Hystrix cristata Mammal Draft Assembly BI
G10K Mammalian Community
Completed
200 Mammals (Phase 1)* PDF icon Degu Octodon degus Mammal Draft Assembly BI
G10K Mammalian Community
Completed
Dog Dog Canis familiaris Mammal Draft Assembly BI Completed
Defining the Transcriptome of Nine Vertebrate Genomes Using RNA-Seq* PDF icon Dog Canis familiaris Mammal Transcriptome BI In Process
Dog Dog Canis familiaris Mammal Genome refinement BI In Process
Top-up of Remaining 2X Mammals Dolphin Tursiops truncates Mammal Draft Assembly BCM-HGSC In Process
Multiple Mammalian Genomes for Comparative Annotation Dolphin Tursiops truncates Mammal Low Coverage (~2X) BCM-HGSC Completed
Expanding Comparative Genomics in Nonhuman Primates* PDF icon Drill Mandrillus leucophaeus Mammal Draft Assembly BCM-HGSC
G10K Mammalian Community
In Process
200 Mammals (Phase 1)* PDF icon Eastern grey kangaroo Macropus giganteus Mammal Draft Assembly BI
G10K Mammalian Community
Completed
Defining the Transcriptome of Nine Vertebrate Genomes Using RNA-Seq* PDF icon Elephant, African Savannah Loxodonta africana africana Mammal Transcriptome BI In Process
Multiple Mammalian Genomes for Comparative Annotation Elephant, African Savannah Loxodonta africana africana Mammal Draft Assembly BI In Process
Multiple Mammalian Genomes for Comparative Annotation Elephant, African Savannah Loxodonta africana Mammal Low Coverage (~2X) BI Completed
Ferret PDF icon Ferret Mustela putorius furo Mammal Draft Genome BI In Process
Top-up of Remaining 2X Mammals Fly Fox (Megabat) Pteropus vampyrus Mammal Draft Assembly WUGSC In Process
Multiple Mammalian Genomes for Comparative Annotation Flying Fox (Megabat) Pteropus vampyrus Mammal Low Coverage (~2X) BCM-HGSC Completed
Expanding Comparative Genomics in Nonhuman Primates* PDF icon Gelada monkey Theropithecus gelada Mammal Draft Assembly BCM-HGSC
G10K Mammalian Community
In Process
200 Mammals (Phase 1)* PDF icon Giant anteater Myrmecophaga tridactyla Mammal Draft Assembly BI
G10K Mammalian Community
Completed
Gibbon PDF icon Gibbon Nomascus leucogenys Mammal BAC-end sequencing WUGSC In Process
Gibbon PDF icon Gibbon Nomascus leucogenys Mammal Draft Assembly BCM-HGSC
WUGSC
In Process
Additional Primate Sequencing Gibbon Nomascus lucogenys Mammal Targeted BAC finishing BCM-HGSC
WUGSC
In Process
200 Mammals (Phase 1)* PDF icon Golden-mantled howling monkey Alouatta palliata Mammal Draft Assembly BI
G10K Mammalian Community
Completed
200 Mammals (Phase 1)* PDF icon Greater horseshoe bat Rhinolophus ferrumequinum Mammal Draft Assembly BI
G10K Mammalian Community
Completed
Multiple Mammalian Genomes for Comparative Annotation Guinea Pig Cavia porcellus Mammal Low Coverage (~2X) BI Completed
Defining the Transcriptome of Nine Vertebrate Genomes Using RNA-Seq* PDF icon Guinea Pig Cavia porcellus Mammal Transcriptome BI In Process
Multiple Mammalian Genomes for Comparative Annotation Guinea Pig Cavia porcellus Mammal Draft Assembly BI In Process
Multiple Mammalian Genomes for Comparative Annotation Hedgehog, European Erinaceus europaeus Mammal Low Coverage (~2X) BI Completed
Top-up of Remaining 2X Mammals Hedgehog, European Erinaceus europeaus Mammal Draft Assembly BI In Process
200 Mammals (Phase 1)* PDF icon Hippopottamus Hippopotamus amphibius Mammal Draft Assembly BI
G10K Mammalian Community
Completed
200 Mammals (Phase 1)* PDF icon Honey Possum (Noolbenger) Tarsipes rostratus Mammal Draft Assembly BI
G10K Mammalian Community
Completed
Multiple Mammalian Genomes for Comparative Annotation Horse Equus caballus Mammal Low Coverage (~2X) BI Completed
Multiple Mammalian Genomes for Comparative Annotation Horse Equus caballus Mammal Draft Assembly BI Completed
Allelic Spectrum of Common Disease Human Homo sapiens Mammal See Hyperlink See Hyperlink
X-linked disorders Human Homo sapiens Mammal See Hyperlink See Hyperlink
Human Structural Variation Human Homo sapiens Mammal Structural Variation BI
BCM-HGSC
WUGSC
Agencourt
JCVI
See Hyperlink
Human Human Homo sapiens Mammal Finished Sequence Consortium Completed
Uncloned, mapped autosomal Mendelian diseases Human Homo sapiens Mammal See Hyperlink See Hyperlink
Multiple Mammalian Genomes for Comparative Annotation Hyrax Procavia capensis Mammal Low Coverage (~2X) BCM-HGSC Completed
Top-up of Remaining 2X Mammals Hyrax Procavia capensis Mammal Draft Assembly BCM-HGSC In Process
200 Mammals (Phase 1)* PDF icon Koala Phascolarctos cinereus Mammal Draft Assembly BI
G10K Mammalian Community
Completed
Top-up of Remaining 2X Mammals Lemur, Flying Dermoptera sp. Mammal Draft Assembly WUGSC In Process
Multiple Mammalian Genomes for Comparative Annotation Lemur, Flying Dermoptera sp. Mammal Low Coverage (~2X) WUGSC ON HOLD
Additional Primate Sequencing Lemur, Mouse Microcebus murinus Mammal Draft Assembly BCM-HGSC In Process
Multiple Mammalian Genomes for Comparative Annotation Lemur, Mouse Microcebus murinus Mammal Low Coverage (~2X) BI Completed
200 Mammals (Phase 1)* PDF icon Lesser Egyptian jerboa Jaculus jaculus Mammal Draft Assembly BI
G10K Mammalian Community
Completed
Defining the Transcriptome of Nine Vertebrate Genomes Using RNA-Seq* PDF icon Lizard, Anole Anolis carolinensis Mammal Transcriptome BI In Process
Multiple Mammalian Genomes for Comparative Annotation Llama Llama sp. Mammal Low Coverage (~2X) WUGSC Cancelled due to unavailability of material
200 Mammals (Phase 1)* PDF icon Long-haired (Rufous) elephant shrew Elephantulus rufescens Mammal Draft Assembly BI
G10K Mammalian Community
Completed
Additional Primate Sequencing Macaque, Cynomolgous Macaca fascicularis Mammal Draft Assembly WUGSC In Process
Genome and other Sequence Information from Primate Models of HIV Infection PDF icon Macaque, Pigtail Macaca nemestrina Mammal Draft Assembly with local refinement and variation data; basic RNA sequencing Not Started
Macaque, Rhesus Macaque, Rhesus Macaca mulatta Mammal Targeted BAC finishing BCM-HGSC
WUGSC
In Process
Macaque, Rhesus Macaque, Rhesus Macaca mulatta Mammal Draft Assembly BCM-HGSC
JCVI
WUGSC
Completed
Multiple Mammalian Y Chromosomes Macaque, Rhesus Macaca mulatta Mammal Genome refinement BCM-HGSC
WUGSC
In Process
Genome and other Sequence Information from Primate Models of HIV Infection PDF icon Macaque, Rhesus (Chinese population) Macaca mulatta Mammal Draft Assembly Not Started
200 Mammals (Phase 1)* PDF icon Malayan tapir Tapirus indicus Mammal Draft Assembly BI
G10K Mammalian Community
Completed
Sooty Mangabey* PDF icon Mangabey, Sooty Cercocebus atys Mammal Draft Assembly BCM-HGSC Not Started
Multiple Mammalian Y Chromosomes Marmoset Callithrix jacchus Mammal Genome refinement BCM-HGSC
WUGSC
In Process
Additional Primate Sequencing Marmoset Callithrix jacchus Mammal Targeted BAC finishing WUGSC
BCM-HGSC
In Process
Marmoset PDF icon Marmoset Callithrix jacchus Mammal Draft Assembly WUGSC
BCM-HGSC
In Process
200 Mammals (Phase 1)* PDF icon Mexican free-tailed bat Tadarida brasiliensis Mammal Draft Assembly BI
G10K Mammalian Community
Completed
Multiple Mammalian Genomes for Comparative Annotation Mole Cryptomys sp. Mammal Low Coverage (~2X) BI On Hold
Additional Primate Sequencing Monkey, Squirrel Saimiri sp. Mammal Draft Assembly BI In Process
Mouse Resequencing PDF icon Mouse Mus musculus Mammal 5 Mb targeted sequencing per line, eventually several hundred lines BI In Process
Mouse Mouse Mus musculus Mammal Finished Sequence BI
WUGSC
SI
BCM-HGSC
Completed
Peromyscus PDF icon Mouse, Deer Peromyscus californicus Mammal Low Coverage (~2X) BCM-HGSC In Process
Peromyscus PDF icon Mouse, Deer Peromyscus maniculatus Mammal Draft Sequence BCM-HGSC In Process
Peromyscus PDF icon Mouse, Deer Peromyscus polionotus Mammal Low Coverage (~2X) BCM-HGSC In Process
Peromyscus PDF icon Mouse, White-Footed Peromyscus leucopus Mammal Low Coverage (~2X) BCM-HGSC In Process
200 Mammals (Phase 1)* PDF icon Naked mole rat Heterocephalus glaber Mammal Draft Assembly BI
G10K Mammalian Community
Completed
200 Mammals (Phase 1)* PDF icon North American porcupine Erethizon dorsatum Mammal Draft Assembly BI
G10K Mammalian Community
Completed
Defining the Transcriptome of Nine Vertebrate Genomes Using RNA-Seq* PDF icon Opossum, Gray Short-Tailed Monodelphis domestica Mammal Transcriptome BI In Process
Opossum, Laboratory Opossum, Laboratory Monodelphis domestica Mammal Draft Assembly BI Completed
Multiple Mammalian Y Chromosomes Opossum, Laboratory Monodelphis domestica Mammal Genome refinement BCM-HGSC
WUGSC
In Process
Additional Primate Sequencing Orangutan Pongo pygmaeus Mammal Draft Assembly BCM-HGSC
WUGSC
Completed
Additional Primate Sequencing Orangutan Pongo pygmaeus Mammal Targeted BAC finishing BCM-HGSC
WUGSC
In Process
Top-up of Remaining 2X Mammals Pangolin Manis pentadactyla Mammal Draft Assembly BCM-HGSC In Process
Multiple Mammalian Genomes for Comparative Annotation Pangolin Manis sp. Mammal Low Coverage (~2X) WUGSC Completed
Expanding Comparative Genomics in Nonhuman Primates* PDF icon Patas monkey Erythropcebus patas Mammal Draft Assembly BCM-HGSC
G10K Mammalian Community
In Process
Top-up of Remaining 2X Mammals Pika Ochotona princeps Mammal Draft Assembly BI In Process
Multiple Mammalian Genomes for Comparative Annotation Pika Ochotona sp. Mammal Low Coverage (~2X) BI Completed
Platypus, Duck-Billed Platypus, Duck-Billed Ornithorhynchus anatinus Mammal Draft Assembly WUGSC Completed
Defining the Transcriptome of Nine Vertebrate Genomes Using RNA-Seq* PDF icon Rabbit Oryctolagus cuniculus Mammal Transcriptome BI In Process
Multiple Mammalian Genomes for Comparative Annotation Rabbit Oryctolagus cuniculus Mammal Draft Assembly BI In Process
Multiple Mammalian Genomes for Comparative Annotation Rabbit Oryctolagus cuniculus Mammal Low Coverage (~2X) BI Completed
Rat Rat Rattus norvegicus Mammal Finished Sequence BCM-HGSC Completed
Multiple Mammalian Y Chromosomes Rat Rattus norvegicus Mammal Genome refinement BCM-HGSC
WUGSC
In Process
Rat Rat Rattus norvegicus Mammal Genome refinement BCM-HGSC In Process
Rat SNPs Rat SNPs Rattus norvegicus Mammal SNP discovery BCM-HGSC Completed
Top-up of Remaining 2X Mammals Rat, Kangaroo Dipodomys sp. Mammal Draft Assembly WUGSC In Process
Multiple Mammalian Genomes for Comparative Annotation Rat, Kangaroo Dipodomys sp. Mammal Low Coverage (~2X) BCM-HGSC Completed
Genome and other Sequence Information from Primate Models of HIV Infection PDF icon Rhesus Macaque Macaca mulatta Mammal RNA expression resource Not Started
200 Mammals (Phase 1)* PDF icon Ring-tailed lemur Lemur catta Mammal Draft Assembly BI
G10K Mammalian Community
Completed
Multiple Mammalian Genomes for Comparative Annotation Shrew, Elephant Elephantulus sp. Mammal Low Coverage (~2X) BI On Hold
Top-up of Remaining 2X Mammals Shrew, European Common Sorex araneus Mammal Draft Assembly BI In Process
Multiple Mammalian Genomes for Comparative Annotation Shrew, European Common Sorex araneus Mammal Low Coverage (~2X) BI Completed
Multiple Mammalian Genomes for Comparative Annotation Shrew, Tree Tupaia belangeri Mammal Draft Assembly WUGSC In Process
Multiple Mammalian Genomes for Comparative Annotation Shrew, Tree Tupaia belangeri Mammal Low Coverage (~2X) BI Completed
Expanding Comparative Genomics in Nonhuman Primates* PDF icon Sifaka Propithecus verreauxi Mammal Draft Assembly BCM-HGSC
G10K Mammalian Community
In Process
Multiple Mammalian Genomes for Comparative Annotation Sloth Choloepus hoffmanni Mammal Low Coverage (~2X) WUGSC Completed
Top-up of Remaining 2X Mammals Sloth Choloepus hoffmanni Mammal Draft Assembly WUGSC In Process
200 Mammals (Phase 1)* PDF icon Springhare Pedetes capensis Mammal Draft Assembly BI
G10K Mammalian Community
Completed
Top-up of Remaining 2X Mammals Squirrel Spermophilis tridecemlineatus Mammal Draft Assembly BI In Process
Multiple Mammalian Genomes for Comparative Annotation Squirrel Spermophilis tridecemlineatus Mammal Low Coverage (~2X) BI Completed
200 Mammals (Phase 1)* PDF icon Star nosed mole Condylura cristata Mammal Draft Assembly BI
G10K Mammalian Community
Completed
Defining the Transcriptome of Nine Vertebrate Genomes Using RNA-Seq* PDF icon Stickleback, Threespine Gasterosteus aculeatus Mammal Transcriptome BI In Process
200 Mammals (Phase 1)* PDF icon Syrian/Golden Hamster Mesocricetus auratus Mammal Draft Assembly BI
G10K Mammalian Community
Completed
Multiple Mammalian Genomes for Comparative Annotation Tarsier Tarsier syrichta Mammal Low Coverage (~2X) WUGSC Completed
Additional Primate Sequencing Tarsier Tarsier syrichta Mammal Draft Assembly WUGSC In Process
Top-up of Remaining 2X Mammals Tenrec (Lesser Hedgehog) Echinops telfairi Mammal Draft Assembly BI In Process
Multiple Mammalian Genomes for Comparative Annotation Tenrec (Lesser Hedgehog) Echinops telfairi Mammal Low Coverage (~2X) BI Completed
Vervet PDF icon Vervet Chlorocebus aethiops Mammal Draft sequence; SNP resource WUGSC In Process
Prairie Vole PDF icon Vole, Prairie Microtus ochrogaster Mammal Draft assembly, SNP resource, and low-coverage of related species BI In Process
Wallaby, Tammar Wallaby, Tammar Macropus eugenii Mammal Low Coverage (~2X) BCM-HGSC
AGRF
In Process
200 Mammals (Phase 1)* PDF icon Water Chevrotain Hyemoschus aquaticus Mammal Draft Assembly BI
G10K Mammalian Community
Completed
200 Mammals (Phase 1)* PDF icon Weddell Seal Leptonychotes weddellii Mammal Draft Assembly BI
G10K Mammalian Community
Completed
200 Mammals (Phase 1)* PDF icon West Indian manatee Trichechus manatus Mammal Draft Assembly BI
G10K Mammalian Community
Completed
200 Mammals (Phase 1)* PDF icon White rhinocerous Ceratotherium simum Mammal Draft Assembly BI
G10K Mammalian Community
Completed
Expanding Comparative Genomics in Nonhuman Primates* PDF icon White-fronted capuchin Cebus albifrons Mammal Draft Assembly BCM-HGSC
G10K Mammalian Community
In Process

* Denotes a Center Initiated Project

**Note: These organisms are not formally approved, but a small number of reads are sequenced to test for sequencing feasibility.

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Last Updated: March 26, 2014