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Division of Genomic Medicine

A Catalog of Published Genome-Wide Association Studies


Update (5/12/15): The NHGRI-EBI GWAS Catalog has moved to the European Molecular Biology Laboratory-European Bioinformatics Institute (EMBL-EBI) at  http://www.ebi.ac.uk/gwas. Users may now find the new search interface and updated content at this site.  Questions about the GWAS Catalog may be directed to gwas-info@ebi.ac.uk.

Why has the catalog moved to EMBL-EBI?
From September 2010 to the present, delivery and development of the Catalog has been a collaborative project between EMBL-EBI and NHGRI. In March 2015 the Catalog infrastructure moved to EMBL-EBI to enable delivery of an improved user interface, including ontology driven Catalog searching, and new curatorial infrastructure, supporting improved QC processes. Catalog content available through this original GWAS Catalog website was last updated on February 20th 2015 with all previous and updated content available at EMBL-EBI. 


The new NHGRI-EBI Catalog of published genome-wide association studies (GWAS Catalog).
Read our recent article from Nucleic Acids Research.

Published Genome-Wide Associations
Credit: Darryl Leja and Teri Manolio, NHGRI; Tony Burdett, Dani Welter, and Helen Parkinson, EBI

 
An archived tab-delimited file of the GWAS Catalog content prior to the EBI transition is available here: Tab Delimited File
 

The genome-wide association study (GWAS) publications in the Catalog include a primary GWAS analysis, defined as array-based genotyping and analysis of 100,000+ pre-QC SNPs selected to tag variation across the genome and without regard to gene content.  GWAS data from published studies which are incorporated into new GWAS analyses are eligible, provided they meet the other criteria.  Studies imputing sequencing data to genotyping arrays are eligible as long as the arrays include sufficient genome-wide coverage so that the post-imputation analysis meets the definition of a GWAS analysis, as described above. The scope of the GWAS Catalog is currently being expanded to include studies of large-scale targeted/non-genome-wide arrays, including the Metabochip, Immunochip and Exome arrays. This is currently in a pilot phase where prioritization of targeted and exome array studies for inclusion in the Catalog is by 1) relevance of the trait analyzed 2) user request.  

How to cite the NHGRI GWAS Catalog:
MacArthur J, Bowler E, Cerezo M, Gil L, Hall P, Hastings E, Junkins H, McMahon A, Milano A, Morales J, Pendlington Z, Welter D, Burdett T, Hindorff L, Flicek P, Cunningham F, and Parkinson H. The new NHGRI-EBI Catalog of published genome-wide association studies (GWAS Catalog). Nucleic Acids Research, 2017, Vol. 45 (Database issue): D896-D901.

For questions or comments about this page, send an e-mail to: gwas_table@mail.nih.gov

 

 

 

 





Notice: The updated Catalog content may now be searched at http://www.ebi.ac.uk/gwas/.

An archived, tab-delimited file of the GWAS Catalog content prior to the EBI transition is available here: Tab Delimited File

Date Added to Catalog (since 11/25/08) First Author/Date/ Journal/Study Disease/Trait Initial
Sample Description
Replication Sample Description Region Reported Gene(s) Mapped Gene(s) Strongest SNP-Risk Allele Context Risk Allele Frequency in Controls P-value
OR or beta-coefficient and [95% CI]
Platform
[SNPs passing QC]
CNV
01/09/14 Hinds DA
June 30, 2013
Nat Genet
A genome-wide association meta-analysis of self-reported allergy identifies shared and allergy-specific susceptibility loci.
Self-reported allergy 53,862 European ancestry individuals NA 5p13.1 DAB2, PTGER4 LINC00603 - PTGER4 rs7720838-G 0.4254 8 x 10-11 .0785 [0.055-0.102] unit decrease Illumina
[2.4 million] (Imputed)
N
03/15/13 Kottgen A
December 23, 2012
Nat Genet
Genome-wide association analyses identify 18 new loci associated with serum urate concentrations.
Urate levels 49,825 European ancestry males, 60,522 European ancestry females Up to 32,813 European ancestry individuals 5p13.1 DAB2 INTS6P1 - LINC00603 rs11954519-A 0.73 4 x 10-6 (women) .033 [0.019-0.047] mg/dl decrease Affymetrix, Illumina, Perlegen
[2,450,547] (imputed)
N
01/18/12 Wu C
December 11, 2011
Nat Genet
Genome-wide association study identifies five loci associated with susceptibility to pancreatic cancer in Chinese populations.
Pancreatic cancer 981 Han Chinese ancestry cases, 1,991 Han Chinese ancestry controls 2,603 Han Chinese ancestry cases, 2,877 Han Chinese ancestry controls 5p13.1 DAB2 DAB2 rs2255280-T intron NR 4 x 10-10 1.23 [1.15-1.32] Affymetrix
[666,141]
N
05/05/10 Kottgen A
April 11, 2010
Nat Genet
New loci associated with kidney function and chronic kidney disease.
Chronic kidney disease Up to 67,093 European ancestry individuals Up to 22,982 European ancestry individuals 5p13.1 DAB2,C9 DAB2 rs11959928-A intron 0.44 1 x 10-7 (eGFRcrea) .01 [0.007-0.011] ml/min/1.73 m2 decrease Affymetrix & Illumina
[~2.5 million] (imputed)
N




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Catalog Data Last Updated: February 20, 2015
Web Page Text Last Updated: September 16, 2015