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NIH

Division of Genomic Medicine

A Catalog of Published Genome-Wide Association Studies


Update (5/12/15): The NHGRI-EBI GWAS Catalog has moved to the European Molecular Biology Laboratory-European Bioinformatics Institute (EMBL-EBI) at  http://www.ebi.ac.uk/gwas. Users may now find the new search interface and updated content at this site.  Questions about the GWAS Catalog may be directed to gwas-info@ebi.ac.uk.

Why has the catalog moved to EMBL-EBI?
From September 2010 to the present, delivery and development of the Catalog has been a collaborative project between EMBL-EBI and NHGRI. In March 2015 the Catalog infrastructure moved to EMBL-EBI to enable delivery of an improved user interface, including ontology driven Catalog searching, and new curatorial infrastructure, supporting improved QC processes. Catalog content available through this original GWAS Catalog website was last updated on February 20th 2015 with all previous and updated content available at EMBL-EBI. 


The new NHGRI-EBI Catalog of published genome-wide association studies (GWAS Catalog).
Read our recent article from Nucleic Acids Research.

Published Genome-Wide Associations
Credit: Darryl Leja and Teri Manolio, NHGRI; Tony Burdett, Dani Welter, and Helen Parkinson, EBI

 
An archived tab-delimited file of the GWAS Catalog content prior to the EBI transition is available here: Tab Delimited File
 

The genome-wide association study (GWAS) publications in the Catalog include a primary GWAS analysis, defined as array-based genotyping and analysis of 100,000+ pre-QC SNPs selected to tag variation across the genome and without regard to gene content.  GWAS data from published studies which are incorporated into new GWAS analyses are eligible, provided they meet the other criteria.  Studies imputing sequencing data to genotyping arrays are eligible as long as the arrays include sufficient genome-wide coverage so that the post-imputation analysis meets the definition of a GWAS analysis, as described above. The scope of the GWAS Catalog is currently being expanded to include studies of large-scale targeted/non-genome-wide arrays, including the Metabochip, Immunochip and Exome arrays. This is currently in a pilot phase where prioritization of targeted and exome array studies for inclusion in the Catalog is by 1) relevance of the trait analyzed 2) user request.  

How to cite the NHGRI GWAS Catalog:
MacArthur J, Bowler E, Cerezo M, Gil L, Hall P, Hastings E, Junkins H, McMahon A, Milano A, Morales J, Pendlington Z, Welter D, Burdett T, Hindorff L, Flicek P, Cunningham F, and Parkinson H. The new NHGRI-EBI Catalog of published genome-wide association studies (GWAS Catalog). Nucleic Acids Research, 2017, Vol. 45 (Database issue): D896-D901.

For questions or comments about this page, send an e-mail to: gwas_table@mail.nih.gov

 

 

 

 





Notice: The updated Catalog content may now be searched at http://www.ebi.ac.uk/gwas/.

An archived, tab-delimited file of the GWAS Catalog content prior to the EBI transition is available here: Tab Delimited File

Date Added to Catalog (since 11/25/08) First Author/Date/ Journal/Study Disease/Trait Initial
Sample Description
Replication Sample Description Region Reported Gene(s) Mapped Gene(s) Strongest SNP-Risk Allele Context Risk Allele Frequency in Controls P-value
OR or beta-coefficient and [95% CI]
Platform
[SNPs passing QC]
CNV
11/25/08 Vasan RS
September 19, 2007
BMC Med Genet
Genome-wide association of echocardiographic dimensions, brachial artery endothelial function and treadmill exercise responses in the Framingham Heart Study.
Echocardiographic traits Up to 1,238 European ancestry individuals NA 4p15.31 SLIT2 SLIT2 rs1379659-? UTR-3 NR 1 x 10-7 (LVDD) NR Affymetrix
[70,897]
N
6q15 SPACA1 AKIRIN2 - SPACA1 rs366676-? NR 2 x 10-6 (LVFS) NR
4p15.31 SLIT2 SLIT2 rs666088-? intron NR 5 x 10-6 (LVDD) NR
8q13.3 KCNB2 KCNB2 rs10504543-? intron NR 5 x 10-6 (LVSD) NR
1q31.1 FAM5C BRINP3 rs1935881-? nearGene-3 NR 6 x 10-6 (LAD) NR
2q36.1 Intergenic MIR4268 - EPHA4 rs10498091-? NR 6 x 10-6 (LVM) NR
1p31.3 PDE4B PDE4B rs10493389-? intron NR 7 x 10-6 (LAD) NR
5q14.3 Intergenic RBBP4P6 - RPL5P17 rs4920799-? NR 7 x 10-6 (LVDD) NR
11/25/08 " Endothelial function traits Up to 1,238 European ancestry individuals NA 10q24.33 OBFC1 OBFC1 rs3814219-? intron NR 9 x 10-7 (BABF) NR Affymetrix
[70,897]
N
11/25/08 " Exercise treadmill test traits Up to 1,238 European ancestry individuals NA 4q25 NOLA1 LRIT3 - KRT19P3 rs6847149-? NR 3 x 10-6 (S2EHR) NR Affymetrix
[70,897]
N
1q43 RYR2 RYR2 rs2819770-? intron NR 4 x 10-6 (S2EHR) NR
11q22.3 Intergenic ZC3H12C rs746463-? intron NR 5 x 10-6 (P3MRSBP) NR
8p12 WRN WRN rs2553268-? intron NR 6 x 10-6 (S2ESBP) NR




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Catalog Data Last Updated: February 20, 2015
Web Page Text Last Updated: September 16, 2015