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NIH

Division of Genomic Medicine

A Catalog of Published Genome-Wide Association Studies


Update (5/12/15): The NHGRI-EBI GWAS Catalog has moved to the European Molecular Biology Laboratory-European Bioinformatics Institute (EMBL-EBI) at  http://www.ebi.ac.uk/gwas. Users may now find the new search interface and updated content at this site.  Questions about the GWAS Catalog may be directed to gwas-info@ebi.ac.uk.

Why has the catalog moved to EMBL-EBI?
From September 2010 to the present, delivery and development of the Catalog has been a collaborative project between EMBL-EBI and NHGRI. In March 2015 the Catalog infrastructure moved to EMBL-EBI to enable delivery of an improved user interface, including ontology driven Catalog searching, and new curatorial infrastructure, supporting improved QC processes. Catalog content available through this original GWAS Catalog website was last updated on February 20th 2015 with all previous and updated content available at EMBL-EBI. 


The new NHGRI-EBI Catalog of published genome-wide association studies (GWAS Catalog).
Read our recent article from Nucleic Acids Research.

Published Genome-Wide Associations
Credit: Darryl Leja and Teri Manolio, NHGRI; Tony Burdett, Dani Welter, and Helen Parkinson, EBI

 
An archived tab-delimited file of the GWAS Catalog content prior to the EBI transition is available here: Tab Delimited File
 

The genome-wide association study (GWAS) publications in the Catalog include a primary GWAS analysis, defined as array-based genotyping and analysis of 100,000+ pre-QC SNPs selected to tag variation across the genome and without regard to gene content.  GWAS data from published studies which are incorporated into new GWAS analyses are eligible, provided they meet the other criteria.  Studies imputing sequencing data to genotyping arrays are eligible as long as the arrays include sufficient genome-wide coverage so that the post-imputation analysis meets the definition of a GWAS analysis, as described above. The scope of the GWAS Catalog is currently being expanded to include studies of large-scale targeted/non-genome-wide arrays, including the Metabochip, Immunochip and Exome arrays. This is currently in a pilot phase where prioritization of targeted and exome array studies for inclusion in the Catalog is by 1) relevance of the trait analyzed 2) user request.  

How to cite the NHGRI GWAS Catalog:
MacArthur J, Bowler E, Cerezo M, Gil L, Hall P, Hastings E, Junkins H, McMahon A, Milano A, Morales J, Pendlington Z, Welter D, Burdett T, Hindorff L, Flicek P, Cunningham F, and Parkinson H. The new NHGRI-EBI Catalog of published genome-wide association studies (GWAS Catalog). Nucleic Acids Research, 2017, Vol. 45 (Database issue): D896-D901.

For questions or comments about this page, send an e-mail to: gwas_table@mail.nih.gov

 

 

 

 





Notice: The updated Catalog content may now be searched at http://www.ebi.ac.uk/gwas/.

An archived, tab-delimited file of the GWAS Catalog content prior to the EBI transition is available here: Tab Delimited File

Date Added to Catalog (since 11/25/08) First Author/Date/ Journal/Study Disease/Trait Initial
Sample Description
Replication Sample Description Region Reported Gene(s) Mapped Gene(s) Strongest SNP-Risk Allele Context Risk Allele Frequency in Controls P-value
OR or beta-coefficient and [95% CI]
Platform
[SNPs passing QC]
CNV
03/23/12 Okada Y
February 19, 2012
Nat Genet
Common variants at CDKAL1 and KLF9 are associated with body mass index in east Asian populations.
Body mass index 26,620 Japanese ancestry individuals 35,625 East Asian ancestry individuals 16q12.2 FTO FTO rs12149832-A intron 0.20 5 x 10-22 .073 [0.057-0.089] unit increase Illumina
[2,178,018] (imputed)
N
11p14.1 BDNF BDNF rs2030323-C intron 0.60 4 x 10-16 .046 [0.034-0.058] unit increase
19q13.32 GIPR GIPR rs11671664-G intron 0.45 7 x 10-14 .046 [0.034-0.058] unit increase
6p22.3 CDKAL1 CDKAL1 rs2206734-C intron 0.59 1 x 10-11 .039 [0.027-0.051] unit increase
18q21.32 MC4R RPS3AP49 - MC4R rs2331841-A 0.25 2 x 10-11 .046 [0.032-0.060] unit increase
9q21.12 KLF9 SMC5 - KLF9 rs11142387-C 0.46 1 x 10-9 .04 [0.018-0.062] unit increase
1q25.2 SEC16B BRINP2 - SEC16B rs516636-A 0.22 3 x 10-9 .05 [0.034-0.066] unit increase
2q32.2 KLF9 C2orf88 rs13034723-A intron NR 2 x 10-8 (rs11142387-C) .066 [0.042-0.090] unit increase
3p22.1 CCK CCK rs4377469-T intron 0.69 2 x 10-7 .039 [0.025-0.053] unit increase
9q22.32 ZNF169 VDAC1P11 - NUTM2F rs10993160-A 0.83 6 x 10-7 .053 [0.031-0.075] unit increase




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Catalog Data Last Updated: February 20, 2015
Web Page Text Last Updated: September 16, 2015