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Division of Genomic Medicine

A Catalog of Published Genome-Wide Association Studies

Update (5/12/15): The NHGRI-EBI GWAS Catalog has moved to the European Molecular Biology Laboratory-European Bioinformatics Institute (EMBL-EBI) at Users may now find the new search interface and updated content at this site.  Questions about the GWAS Catalog may be directed to

Why has the catalog moved to EMBL-EBI?
From September 2010 to the present, delivery and development of the Catalog has been a collaborative project between EMBL-EBI and NHGRI. In March 2015 the Catalog infrastructure moved to EMBL-EBI to enable delivery of an improved user interface, including ontology driven Catalog searching, and new curatorial infrastructure, supporting improved QC processes. Catalog content available through this original GWAS Catalog website was last updated on February 20th 2015 with all previous and updated content available at EMBL-EBI. 

The new NHGRI-EBI Catalog of published genome-wide association studies (GWAS Catalog).
Read our recent article from Nucleic Acids Research.

Published Genome-Wide Associations
Credit: Darryl Leja and Teri Manolio, NHGRI; Tony Burdett, Dani Welter, and Helen Parkinson, EBI

An archived tab-delimited file of the GWAS Catalog content prior to the EBI transition is available here: Tab Delimited File

The genome-wide association study (GWAS) publications in the Catalog include a primary GWAS analysis, defined as array-based genotyping and analysis of 100,000+ pre-QC SNPs selected to tag variation across the genome and without regard to gene content.  GWAS data from published studies which are incorporated into new GWAS analyses are eligible, provided they meet the other criteria.  Studies imputing sequencing data to genotyping arrays are eligible as long as the arrays include sufficient genome-wide coverage so that the post-imputation analysis meets the definition of a GWAS analysis, as described above. The scope of the GWAS Catalog is currently being expanded to include studies of large-scale targeted/non-genome-wide arrays, including the Metabochip, Immunochip and Exome arrays. This is currently in a pilot phase where prioritization of targeted and exome array studies for inclusion in the Catalog is by 1) relevance of the trait analyzed 2) user request.  

How to cite the NHGRI GWAS Catalog:
MacArthur J, Bowler E, Cerezo M, Gil L, Hall P, Hastings E, Junkins H, McMahon A, Milano A, Morales J, Pendlington Z, Welter D, Burdett T, Hindorff L, Flicek P, Cunningham F, and Parkinson H. The new NHGRI-EBI Catalog of published genome-wide association studies (GWAS Catalog). Nucleic Acids Research, 2017, Vol. 45 (Database issue): D896-D901.

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Notice: The updated Catalog content may now be searched at

An archived, tab-delimited file of the GWAS Catalog content prior to the EBI transition is available here: Tab Delimited File

Date Added to Catalog (since 11/25/08) First Author/Date/ Journal/Study Disease/Trait Initial
Sample Description
Replication Sample Description Region Reported Gene(s) Mapped Gene(s) Strongest SNP-Risk Allele Context Risk Allele Frequency in Controls P-value
OR or beta-coefficient and [95% CI]
[SNPs passing QC]
09/12/13 Michailidou K
April 01, 2013
Nat Genet
Large-scale genotyping identifies 41 new loci associated with breast cancer risk.
Breast cancer 10,052 European ancestry cases, 12,575 European ancestry controls 45,290 European ancestry cases, 41,880 European ancestry controls View full set of 63 SNPs Illumina & Affymetrix
[~2.6 million] (Imputed)
10q26.13 FGFR2 FGFR2 rs2981579-A intron 0.4 2 x 10-170 1.27 [1.24-1.29]
16q12.1 TOX3 CASC16 rs3803662-A ncRNA 0.26 2 x 10-114 1.24 [1.21-1.27]
11q13.3 Intergenic IFITM9P - CCND1 rs614367-T 0.15 2 x 10-63 1.21 [1.18-1.24]
2q35 Intergenic TNP1 - DIRC3 rs13387042-A 0.51 2 x 10-57 1.14 [1.11-1.16]
5p12 Intergenic FGF10-AS1 - MRPS30 rs10941679-G 0.25 2 x 10-37 1.13 [1.10-1.15]
10q21.2 ZNF365 ZNF365 rs10995190-G intron 0.84 1 x 10-36 1.16 [1.14-1.19]
5q11.2 MAP3K1 RPL26P19 - MAP3K1 rs889312-C 0.28 3 x 10-36 1.12 [1.10-1.15]
9q31.2 Intergenic CHCHD4P2 - RPL36P14 rs865686-T 0.62 1 x 10-34 1.12 [1.1-1.14]
12p11.22 PTHLH PTHLH - CCDC91 rs10771399-A 0.88 8 x 10-31 1.16 [1.14-1.2]
3p24.1 SLC4A7 SLC4A7 rs4973768-T UTR-3 0.47 2 x 10-30 1.1 [1.08-1.12]

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Catalog Data Last Updated: February 20, 2015
Web Page Text Last Updated: September 16, 2015