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Division of Genomic Medicine

A Catalog of Published Genome-Wide Association Studies


Update (5/12/15): The NHGRI-EBI GWAS Catalog has moved to the European Molecular Biology Laboratory-European Bioinformatics Institute (EMBL-EBI) at  http://www.ebi.ac.uk/gwas. Users may now find the new search interface and updated content at this site.  Questions about the GWAS Catalog may be directed to gwas-info@ebi.ac.uk.

Why has the catalog moved to EMBL-EBI?
From September 2010 to the present, delivery and development of the Catalog has been a collaborative project between EMBL-EBI and NHGRI. In March 2015 the Catalog infrastructure moved to EMBL-EBI to enable delivery of an improved user interface, including ontology driven Catalog searching, and new curatorial infrastructure, supporting improved QC processes. Catalog content available through this original GWAS Catalog website was last updated on February 20th 2015 with all previous and updated content available at EMBL-EBI. 


The new NHGRI-EBI Catalog of published genome-wide association studies (GWAS Catalog).
Read our recent article from Nucleic Acids Research.

Published Genome-Wide Associations
Credit: Darryl Leja and Teri Manolio, NHGRI; Tony Burdett, Dani Welter, and Helen Parkinson, EBI

 
An archived tab-delimited file of the GWAS Catalog content prior to the EBI transition is available here: Tab Delimited File
 

The genome-wide association study (GWAS) publications in the Catalog include a primary GWAS analysis, defined as array-based genotyping and analysis of 100,000+ pre-QC SNPs selected to tag variation across the genome and without regard to gene content.  GWAS data from published studies which are incorporated into new GWAS analyses are eligible, provided they meet the other criteria.  Studies imputing sequencing data to genotyping arrays are eligible as long as the arrays include sufficient genome-wide coverage so that the post-imputation analysis meets the definition of a GWAS analysis, as described above. The scope of the GWAS Catalog is currently being expanded to include studies of large-scale targeted/non-genome-wide arrays, including the Metabochip, Immunochip and Exome arrays. This is currently in a pilot phase where prioritization of targeted and exome array studies for inclusion in the Catalog is by 1) relevance of the trait analyzed 2) user request.  

How to cite the NHGRI GWAS Catalog:
MacArthur J, Bowler E, Cerezo M, Gil L, Hall P, Hastings E, Junkins H, McMahon A, Milano A, Morales J, Pendlington Z, Welter D, Burdett T, Hindorff L, Flicek P, Cunningham F, and Parkinson H. The new NHGRI-EBI Catalog of published genome-wide association studies (GWAS Catalog). Nucleic Acids Research, 2017, Vol. 45 (Database issue): D896-D901.

For questions or comments about this page, send an e-mail to: gwas_table@mail.nih.gov

 

 

 

 





Notice: The updated Catalog content may now be searched at http://www.ebi.ac.uk/gwas/.

An archived, tab-delimited file of the GWAS Catalog content prior to the EBI transition is available here: Tab Delimited File

Date Added to Catalog (since 11/25/08) First Author/Date/ Journal/Study Disease/Trait Initial
Sample Description
Replication Sample Description Region Reported Gene(s) Mapped Gene(s) Strongest SNP-Risk Allele Context Risk Allele Frequency in Controls P-value
OR or beta-coefficient and [95% CI]
Platform
[SNPs passing QC]
CNV
04/26/14 Wu Y
October 14, 2013
Hum Mol Genet
A meta-analysis of genome-wide association studies for adiponectin levels in East Asians identifies a novel locus near WDR11-FGFR2.
Adiponectin levels 6,110 East Asian ancestry individuals, 1,717 Filipino ancestry individuals 10,252 East Asian ancestry individuals 16q23.3 CDH13 CDH13 rs4783244-T intron 0.360 7 x 10-165 .33 [0.31-0.35] unit decrease Illumina and Affymetrix
[~2.5 million] (imputed)
N
3q27.3 ADIPOQ RFC4 - ADIPOQ rs10937273-A 0.404 2 x 10-22 .12 [0.10-0.14] unit increase
10q26.12 WDR11, FGFR2 LINC01153 rs3943077-A ncRNA 0.567 3 x 10-14 .07 [0.050-0.090] unit increase
19q13.11 PEPD PEPD rs889140-A intron 0.450 4 x 10-12 .08 [0.060-0.100] unit increase
16q23.2 CMIP CMIP rs2925979-T intron 0.411 2 x 10-10 .08 [0.060-0.100] unit decrease
12q13.11 OR8S1, LALBA OR8S1 - OR5BS1P rs11168618-T 0.137 1 x 10-7 .06 [0.040-0.080] unit decrease
12q24.31 ZNF664 ZNF664; ZNF664-FAM101A; LOC102723902 rs1187415-C intron;intron;intron 0.920 2 x 10-7 .11 [0.071-0.149] unit decrease
3q27.3 ADIPOQ EIF4A2; SNORD2 rs266719-T intron;nearGene-5 0.096 7 x 10-7 (Conditioned on rs10937273) .13 [0.071-0.189] unit increase
6q24.2 HIVEP2 HIVEP2 rs12211360-A intron 0.966 6 x 10-6 .16 [0.10-0.22] unit decrease
12q24.31 GPR109A VPS37B - ABCB9 rs10847980-T 0.771 7 x 10-6 .06 [0.040-0.080] unit decrease




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Catalog Data Last Updated: February 20, 2015
Web Page Text Last Updated: September 16, 2015