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Division of Genomic Medicine

A Catalog of Published Genome-Wide Association Studies


Update (5/12/15): The NHGRI-EBI GWAS Catalog has moved to the European Molecular Biology Laboratory-European Bioinformatics Institute (EMBL-EBI) at  http://www.ebi.ac.uk/gwas. Users may now find the new search interface and updated content at this site.  Questions about the GWAS Catalog may be directed to gwas-info@ebi.ac.uk.

Why has the catalog moved to EMBL-EBI?
From September 2010 to the present, delivery and development of the Catalog has been a collaborative project between EMBL-EBI and NHGRI. In March 2015 the Catalog infrastructure moved to EMBL-EBI to enable delivery of an improved user interface, including ontology driven Catalog searching, and new curatorial infrastructure, supporting improved QC processes. Catalog content available through this original GWAS Catalog website was last updated on February 20th 2015 with all previous and updated content available at EMBL-EBI. 


The new NHGRI-EBI Catalog of published genome-wide association studies (GWAS Catalog).
Read our recent article from Nucleic Acids Research.

Published Genome-Wide Associations
Credit: Darryl Leja and Teri Manolio, NHGRI; Tony Burdett, Dani Welter, and Helen Parkinson, EBI

 
An archived tab-delimited file of the GWAS Catalog content prior to the EBI transition is available here: Tab Delimited File
 

The genome-wide association study (GWAS) publications in the Catalog include a primary GWAS analysis, defined as array-based genotyping and analysis of 100,000+ pre-QC SNPs selected to tag variation across the genome and without regard to gene content.  GWAS data from published studies which are incorporated into new GWAS analyses are eligible, provided they meet the other criteria.  Studies imputing sequencing data to genotyping arrays are eligible as long as the arrays include sufficient genome-wide coverage so that the post-imputation analysis meets the definition of a GWAS analysis, as described above. The scope of the GWAS Catalog is currently being expanded to include studies of large-scale targeted/non-genome-wide arrays, including the Metabochip, Immunochip and Exome arrays. This is currently in a pilot phase where prioritization of targeted and exome array studies for inclusion in the Catalog is by 1) relevance of the trait analyzed 2) user request.  

How to cite the NHGRI GWAS Catalog:
MacArthur J, Bowler E, Cerezo M, Gil L, Hall P, Hastings E, Junkins H, McMahon A, Milano A, Morales J, Pendlington Z, Welter D, Burdett T, Hindorff L, Flicek P, Cunningham F, and Parkinson H. The new NHGRI-EBI Catalog of published genome-wide association studies (GWAS Catalog). Nucleic Acids Research, 2017, Vol. 45 (Database issue): D896-D901.

For questions or comments about this page, send an e-mail to: gwas_table@mail.nih.gov

 

 

 

 





Notice: The updated Catalog content may now be searched at http://www.ebi.ac.uk/gwas/.

An archived, tab-delimited file of the GWAS Catalog content prior to the EBI transition is available here: Tab Delimited File

Date Added to Catalog (since 11/25/08) First Author/Date/ Journal/Study Disease/Trait Initial
Sample Description
Replication Sample Description Region Reported Gene(s) Mapped Gene(s) Strongest SNP-Risk Allele Context Risk Allele Frequency in Controls P-value
OR or beta-coefficient and [95% CI]
Platform
[SNPs passing QC]
CNV
10/23/14 Mahajan A
February 09, 2014
Nat Genet
Genome-wide trans-ancestry meta-analysis provides insight into the genetic architecture of type 2 diabetes susceptibility.
Type 2 diabetes 12,171 European ancestry cases, 56,862 European ancestry controls, 6,952 East Asian ancestry cases, 11,865 East Asian ancestry controls, 5,561 South Asian ancestry cases, 14,458 South Asian ancestry controls, 1,804 Mexican ancestry cases, 779 Mexican ancestry controls 21,491 European ancestry cases, 55,647 European ancestry controls View full set of 62 SNPs Affymetrix & Illumina
[2.5 million] (Imputed)
N
10q25.2 TCF7L2 TCF7L2 rs7903146-T intron 0.3 8 x 10-75 1.4 [1.35-1.46]
9p21.3 CDKN2A,CDKN2B UBA52P6 - DMRTA1 rs10811661-T 0.82 1 x 10-27 1.18 [1.13-1.24]
6p22.3 CDKAL1 CDKAL1 rs7756992-G intron 0.26 2 x 10-26 1.2 [1.16-1.25]
10q23.33 HHEX,IDE HHEX - EXOC6 rs1111875-C 0.58 3 x 10-19 1.15 [1.11-1.19]
8q24.11 SLC30A8 SLC30A8 rs3802177-G UTR-3 0.7 2 x 10-18 1.16 [1.11-1.22]
3q27.2 IGF2BP2 IGF2BP2 rs4402960-T intron 0.31 1 x 10-17 1.13 [1.09-1.17]
11p15.4 KCNQ1 KCNQ1 rs163184-G intron 0.5 2 x 10-14 1.09 [1.04-1.13]
4q31.3 TMEM154 RPS3AP18 - RPS14P6 rs6813195-C 4 x 10-14 1.08 [1.06-1.10]
16q12.2 FTO FTO rs9936385-C intron 0.39 1 x 10-12 1.13 [1.09-1.18]
15q24.3 HMG20A HMG20A rs7178572-G intron 0.7 2 x 10-11 1.08 [1.04-1.13]




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Catalog Data Last Updated: February 20, 2015
Web Page Text Last Updated: September 16, 2015