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NIH

Division of Genomic Medicine

A Catalog of Published Genome-Wide Association Studies


Update (5/12/15): The NHGRI-EBI GWAS Catalog has moved to the European Molecular Biology Laboratory-European Bioinformatics Institute (EMBL-EBI) at  http://www.ebi.ac.uk/gwas. Users may now find the new search interface and updated content at this site.  Questions about the GWAS Catalog may be directed to gwas-info@ebi.ac.uk.

Why has the catalog moved to EMBL-EBI?
From September 2010 to the present, delivery and development of the Catalog has been a collaborative project between EMBL-EBI and NHGRI. In March 2015 the Catalog infrastructure moved to EMBL-EBI to enable delivery of an improved user interface, including ontology driven Catalog searching, and new curatorial infrastructure, supporting improved QC processes. Catalog content available through this original GWAS Catalog website was last updated on February 20th 2015 with all previous and updated content available at EMBL-EBI. 


The new NHGRI-EBI Catalog of published genome-wide association studies (GWAS Catalog).
Read our recent article from Nucleic Acids Research.

Published Genome-Wide Associations
Credit: Darryl Leja and Teri Manolio, NHGRI; Tony Burdett, Dani Welter, and Helen Parkinson, EBI

 
An archived tab-delimited file of the GWAS Catalog content prior to the EBI transition is available here: Tab Delimited File
 

The genome-wide association study (GWAS) publications in the Catalog include a primary GWAS analysis, defined as array-based genotyping and analysis of 100,000+ pre-QC SNPs selected to tag variation across the genome and without regard to gene content.  GWAS data from published studies which are incorporated into new GWAS analyses are eligible, provided they meet the other criteria.  Studies imputing sequencing data to genotyping arrays are eligible as long as the arrays include sufficient genome-wide coverage so that the post-imputation analysis meets the definition of a GWAS analysis, as described above. The scope of the GWAS Catalog is currently being expanded to include studies of large-scale targeted/non-genome-wide arrays, including the Metabochip, Immunochip and Exome arrays. This is currently in a pilot phase where prioritization of targeted and exome array studies for inclusion in the Catalog is by 1) relevance of the trait analyzed 2) user request.  

How to cite the NHGRI GWAS Catalog:
MacArthur J, Bowler E, Cerezo M, Gil L, Hall P, Hastings E, Junkins H, McMahon A, Milano A, Morales J, Pendlington Z, Welter D, Burdett T, Hindorff L, Flicek P, Cunningham F, and Parkinson H. The new NHGRI-EBI Catalog of published genome-wide association studies (GWAS Catalog). Nucleic Acids Research, 2017, Vol. 45 (Database issue): D896-D901.

For questions or comments about this page, send an e-mail to: gwas_table@mail.nih.gov

 

 

 

 





Notice: The updated Catalog content may now be searched at http://www.ebi.ac.uk/gwas/.

An archived, tab-delimited file of the GWAS Catalog content prior to the EBI transition is available here: Tab Delimited File

Date Added to Catalog (since 11/25/08) First Author/Date/ Journal/Study Disease/Trait Initial
Sample Description
Replication Sample Description Region Reported Gene(s) Mapped Gene(s) Strongest SNP-Risk Allele Context Risk Allele Frequency in Controls P-value
OR or beta-coefficient and [95% CI]
Platform
[SNPs passing QC]
CNV
10/21/14 Zeng Z
February 18, 2014
Caries Res
Genome-wide association study of primary dentition pit-and-fissure and smooth surface caries.
Smooth-surface caries 1006 European ancestry individuals NA View full set of 31 SNPs Illumina
[1,216,189] Imputed
N
16p11.2 ITGAL ITGAL rs1064524-T missense 0.0485 2 x 10-7 .5404 [NR] unit increase
12q14.3 IRAK3 IRAK3 rs17826057-A intron 0.0503 3 x 10-7 2.65 [NR] unit increase
4q13.3 ANKRD17 ANKRD17 rs6818964-T intron 0.022 7 x 10-7 5.63 [NR] unit increase
Xq21.2 CHM MIR1321 - CHM rs5967638-A 0.0658 8 x 10-7 3.485 [NR] unit increase
13q32.2 IPO5 FTLP8 - FARP1 rs16954776-A 0.0156 9 x 10-7 5.1206 [NR] unit decrease
8q22.3 FKSG17 ZNF706 - DUXAP2 rs16867579-A 0.0155 1 x 10-6 8.4163 [NR] unit decrease
11p15.4 PRKCDBP PRKCDBP rs1488864-A nearGene-5 0.0932 1 x 10-6 1.295 [NR] unit increase
14q31.1 TSHR TSHR; LOC101928431 rs17111530-T intron;intron 0.0667 1 x 10-6 2.529 [NR] unit decrease
6p21.2 KIF6 KIF6 rs9471075-A intron 0.0247 1 x 10-6 5.25 [NR] unit decrease
3p24.1 LINC00693 LINC00693 - MESTP4 rs4016429-C 0.0157 2 x 10-6 4.564 [NR] unit decrease




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Catalog Data Last Updated: February 20, 2015
Web Page Text Last Updated: September 16, 2015