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NIH

Division of Genomic Medicine

A Catalog of Published Genome-Wide Association Studies


Update (5/12/15): The NHGRI-EBI GWAS Catalog has moved to the European Molecular Biology Laboratory-European Bioinformatics Institute (EMBL-EBI) at  http://www.ebi.ac.uk/gwas. Users may now find the new search interface and updated content at this site.  Questions about the GWAS Catalog may be directed to gwas-info@ebi.ac.uk.

Why has the catalog moved to EMBL-EBI?
From September 2010 to the present, delivery and development of the Catalog has been a collaborative project between EMBL-EBI and NHGRI. In March 2015 the Catalog infrastructure moved to EMBL-EBI to enable delivery of an improved user interface, including ontology driven Catalog searching, and new curatorial infrastructure, supporting improved QC processes. Catalog content available through this original GWAS Catalog website was last updated on February 20th 2015 with all previous and updated content available at EMBL-EBI. 


The new NHGRI-EBI Catalog of published genome-wide association studies (GWAS Catalog).
Read our recent article from Nucleic Acids Research.

Published Genome-Wide Associations
Credit: Darryl Leja and Teri Manolio, NHGRI; Tony Burdett, Dani Welter, and Helen Parkinson, EBI

 
An archived tab-delimited file of the GWAS Catalog content prior to the EBI transition is available here: Tab Delimited File
 

The genome-wide association study (GWAS) publications in the Catalog include a primary GWAS analysis, defined as array-based genotyping and analysis of 100,000+ pre-QC SNPs selected to tag variation across the genome and without regard to gene content.  GWAS data from published studies which are incorporated into new GWAS analyses are eligible, provided they meet the other criteria.  Studies imputing sequencing data to genotyping arrays are eligible as long as the arrays include sufficient genome-wide coverage so that the post-imputation analysis meets the definition of a GWAS analysis, as described above. The scope of the GWAS Catalog is currently being expanded to include studies of large-scale targeted/non-genome-wide arrays, including the Metabochip, Immunochip and Exome arrays. This is currently in a pilot phase where prioritization of targeted and exome array studies for inclusion in the Catalog is by 1) relevance of the trait analyzed 2) user request.  

How to cite the NHGRI GWAS Catalog:
MacArthur J, Bowler E, Cerezo M, Gil L, Hall P, Hastings E, Junkins H, McMahon A, Milano A, Morales J, Pendlington Z, Welter D, Burdett T, Hindorff L, Flicek P, Cunningham F, and Parkinson H. The new NHGRI-EBI Catalog of published genome-wide association studies (GWAS Catalog). Nucleic Acids Research, 2017, Vol. 45 (Database issue): D896-D901.

For questions or comments about this page, send an e-mail to: gwas_table@mail.nih.gov

 

 

 

 





Notice: The updated Catalog content may now be searched at http://www.ebi.ac.uk/gwas/.

An archived, tab-delimited file of the GWAS Catalog content prior to the EBI transition is available here: Tab Delimited File

Date Added to Catalog (since 11/25/08) First Author/Date/ Journal/Study Disease/Trait Initial
Sample Description
Replication Sample Description Region Reported Gene(s) Mapped Gene(s) Strongest SNP-Risk Allele Context Risk Allele Frequency in Controls P-value
OR or beta-coefficient and [95% CI]
Platform
[SNPs passing QC]
CNV
11/08/14 Cobb J
April 08, 2014
Pharmacogenomics J
Genome-wide data reveal novel genes for methotrexate response in a large cohort of juvenile idiopathic arthritis cases.
Response to methotrexate in juvenile idiopathic arthritis 694 European ancestry child cases NA View full set of 18 SNPs Illumina
[586,062]
N
22q13.1 APOBEC3B, APOBEC3C, CACNA1I, SYNGR1 CACNA1I rs2294369-A missense NR 9 x 10-8 (AJC) 2.77 [1.77-3.77] unit increase
8q24.21 PVT1, ADCY8 LINC01263 - LINC00977 rs10956445-C NR 5 x 10-7 (AJC) 2.73 [1.67-3.79] unit decrease
7q31.2 CFTR, CTTNBP2, LSM8 CTTNBP2 rs757278-T intron NR 5 x 10-7 (ParVAS) 1.32 [0.81-1.83] unit increase
5p13.3 CDH6 HPRTP2 - RPL19P11 rs12652364-A NR 6 x 10-7 (PhysVAS) 1.45 [0.88-2.02] unit decrease
8p23.2 CSMD1 CSMD1 rs4395908-C intron NR 1 x 10-6 (CHAQ) .27 [0.17-0.37] unit decrease
10q22.3 ZMIZ1 ZMIZ1 rs10128264-C intron NR 1 x 10-6 (ParVAS) 1.18 [0.71-1.65] unit decrease
11q22.1 ANGPTL5, KIAA1377 ANGPTL5 rs11225055-C intron NR 1 x 10-6 (LJC) 3.49 [2.08-4.90] unit decrease
8q21.13 RALYL, SNX16 HNRNPA1P36 - HNRNPA1P4 rs7839040-G NR 2 x 10-6 (LJC) 1.81 [1.07-2.55] unit decrease
15q12 GABRB3, GABRG3 GABRB3 rs61996546-C intron NR 3 x 10-6 (PhysVAS) .78 [0.47-1.09] unit decrease
8q21.13 RALYL, SNX16 HNRNPA1P36 - HNRNPA1P4 rs10113213-T NR 3 x 10-6 (AJC) 1.99 [1.15-2.83] unit decrease




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Catalog Data Last Updated: February 20, 2015
Web Page Text Last Updated: September 16, 2015