Online Research Resources
Contents |
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 |
From NHGRI | ||
| Online Research Resources Developed at NHGRI | |||
| NHGRI Reports and Publications | |||
| The Large-Scale Genome Sequencing Program | |||
|
Beyond NHGRI | ||
| The Completed Human Sequence | |||
| Other Federal Agencies Involved in Genomics | |||
|
Human Genome Sequence Assemblies and Other Genomic Data Resources | ||
|
Underlying Map Information | ||
|
Sequencing Centers of the International Human Genome Sequencing Consortium | ||
|
Model Organism Genome Projects | ||
| Archaea and Bacteria | |||
| Eukaryotes | |||
|
Databases | ||
| National Center for Biotechnology Information (NCBI) Databases and Tools | |||
| Nucleotide Sequence Databases | |||
| Trace Archives (Raw Sequence Data Repositories) | |||
| Single Nucleotide Polymorphisms (SNPs) | |||
| cDNAs and Expressed Sequence Tags (ESTs) | |||
| Model Organism Databases | |||
| Additional Sequence, Gene and Protein Databases | |||
|
Ethical, Legal and Social Implications (ELSI) Information | ||
|
Funding Agencies | ||
|
Additional Genome Resources | ||
|
Biology Resources | ||
|
Selected Journals | ||
From NHGRI
Online Research Resources Developed at NHGRI
Software, databases and research project Web sites from NHGRI's Division of Intramural Research (DIR).
NHGRI Reports and Publications
- Reports and Publications from the Division of Extramural Research:
Workshops and priority setting reports, long-range planning, and Ethical, Legal, and Social Implications (ELSI) reports
- Publications, Books and Recources from the Division of Intramural Research:
Scientific publications by NHGRI investigators, genomics course materials, and program publications
The Large-Scale Genome Sequencing Program
Genome sequencing and BAC library proposals and projects currently in production and funded by NHGRI.
Includes:
Beyond NHGRI
The Completed Human Sequence:
- At The National Center for Biotechnology Information (NCBI) [ncbi.nlm.nih.gov]
- At The University of California Santa Cruz (UCSC) Gateway [genome.cse.ucsc.edu]
- At Ensembl [ensembl.org]
Other Federal Agencies Involved in Genomics
Human Genome Sequence Assemblies and Other Genomic Data Resources
- UCSC Human Genome Browser Gateway [genome.cse.ucsc.edu]
- Ensembl Human Genome Server [ensembl.org]
- NCBI Human Genome Guide [ncbi.nlm.nih.gov]
- Oak Ridge National Laboratory's Genome Channel [compbio.ornl.gov]
Underlying Map Information
- GeneMap99 [ncbi.nlm.nih.gov]
- Marshfield Comprehensive Human Genetic Maps [research.marshfieldclinic.org]
- Genethon [w3.genethon.fr/php/index_us.php]
Sequencing Centers of the International Human Genome Sequencing Consortium
(Listed in order of total sequence contributed to the draft human sequence published February 15, 2001, Nature, 409:860-921)
- Whitehead Institute for Biomedical Research Center for Genome Research [broadinstitute.org]
(Now the Broad Institute of MIT and Harvard) - The Sanger Institute [sanger.ac.uk]
- Washington University Genome Sequencing Center [genome.wustl.edu]
- US DOE Joint Genome Institute [jgi.doe.gov]
- Baylor College of Medicine Human Genome Sequencing Center [hgsc.bcm.tmc.edu]
- RIKEN Genomic Sciences Center [gsc.riken.go.jp]
- Genoscope [genoscope.cns.fr]
- GTC Sequencing Center [genomecorp.com]
(Now Oscient Pharmaceuticals) - Department of Genome Analysis, Institute of Molecular Biotechnology [genome.imb-jena.de]
- Multimegabase Sequencing Center, The Institute for Systems Biology [systemsbiology.org]
- Beijing Genomics Institute Human Genome Center [genomics.cn]
- Stanford Genome Technology Center [med.stanford.edu]
- HudsonAlpha Genome Sequencing Center [hagsc.org/]
- University of Washington Genome Center [gs.washington.edu]
- Department of Molecular Biology, Keio University School of Medicine [dmb.med.keio.ac.jp]
- University of Texas Southwestern Medical Center at Dallas [utsouthwestern.edu]
- University of Oklahoma's Advanced Center for Genome Technology [genome.ou.edu]
- Max Planck Institute for Molecular Genetics [seq.molgen.mpg.de]
- Cold Spring Harbor Laboratory, Lita Annenberg Hazen Genome Center [mccombielab.cshl.edu]
- GBF: German Research Centre for Biotechnology [helmholtz-hzi.de]
Model Organism Genome Projects
Archaea and Bacteria
- J. Craig Venter Institute [jcvi.org]
- The Sanger Institute Microbial Sequencing Projects [sanger.ac.uk]
- Bacillus subtilis Genome [pbil.univ-lyon1.fr]
- E. coli Genome Project [genome.wisc.edu]
Eukaryotes
- The Arabidopsis Information Resource (TAIR) [arabidopsis.org]
- C. elegans Genome Project [sanger.ac.uk]
- Flybase [flybase.bio.indiana.edu]
- Fugu Genomics Project [fugu.hgmp.mrc.ac.uk]
- Fungal Genome Resource [gene.genetics.uga.edu]
- Maize Genome Database (ZmDB) [maizegdb.org]
- Mouse Genome Informatics [informatics.jax.org]
- Pneumocystis Genome Project [biology.uky.edu]
- Rice Genome Research Program [rgp.dna.affrc.go.jp]
- Saccharomyces Genome Database [yeastgenome.org]
- The Zebrafish Model Organism Database [zfin.org]
Databases
National Center for Biotechnology Information (NCBI) Databases and Tools
- NCBI [ncbi.nlm.nih.gov]
- EntrezGene [ncbi.nlm.nih.gov]
A searchable database of genes- NCBI Reference Sequence Project (RefSeq) [ncbi.nlm.nih.gov]
- Macromolecular 3D Structures Database (MMDB) [ncbi.nlm.nih.gov]
- GenBank [ncbi.nlm.nih.gov]
Nucleotide Sequence Databases
- GenBank [ncbi.nlm.nih.gov]
- EMBL Nucleotide Sequence Database [ebi.ac.uk]
- DNA Data Bank of Japan [ddbj.nig.ac.jp]
Trace Archives (Raw Sequence Data Repositories)
- NCBI Trace Archive [ncbi.nlm.nih.gov]
Single Nucleotide Polymorphisms (SNPs)
- The SNP Consortium [snp.cshl.org]
- NCBI dbSNP [ncbi.nlm.nih.gov]
cDNAs and Expressed Sequence Tags (ESTs)
- Mammalian Gene Collection [mgc.nci.nih.gov]
- NCBI dbEST [ncbi.nlm.nih.gov]
- RIKEN Mouse Encyclopedia [genome.rtc.riken.go.jp]
Model Organism Databases
- Berkeley Drosophila Genome Project [fruitfly.org]
- Ciona savigny Database [broadinstitute.org]
- FlyBase, Drosophila Database [flybase.bio.indiana.edu]
- MGD, The Mouse Genome Database [informatics.jax.org]
- Saccharomyces Genome Database [yeastgenome.org]
- Tetraodon nigroviridis Database [broadinstitute.org]
- WormBase, The C. elegans Genome Database [wormbase.org]
- Gene Ontology Consortium [geneontology.org]
- The Generic Model Organism Project (GMOD) [gmod.org]
- Comprehensive Microbial Resource [cmr.jcvi.org]
Additional Sequence, Gene and Protein Databases
- BLOCKS [blocks.fhcrc.org]
A service for biological sequence analysis.- Eukaryotic Promoter Database [epd.isb-sib.ch]
- PROSITE [expasy.org]
A database of protein families and domains.- SWISS-PROT [expasy.org]
A protein knowledgebase.- BioMagResBank [bmrb.wisc.edu]
NMR spectroscopy data on proteins, peptides, and nucleic acids.- Protein Data Bank (PDB) [rcsb.org]
The repository for 3-D biological macromolecular structure data.- DSSP [swift.cmbi.kun.nl]
A database of secondary structure protein assignments.- FSSP [biocenter.helsinki.fi]
A database of fold classifications based on structure-structure alignment of proteins.- HSSP [cmbi.kun.nl]
A database of homology-derived secondary structure of proteins.- Nucleic Acid Database Project (NDB) [ndbserver.rutgers.edu]
Structural information about nucleic acids.- The I.M.A.G.E. Consortium [image.hudsonalpha.org]
A public collection of genes.
Ethical, Legal and Social Implications (ELSI) Research Program
- Ethical, Legal and Social Implications (ELSI) Research Program (NHGRI)
- Ethical, Legal and Social Issues (ELSI) [ornl.gov]
Department of Energy (DOE)
Funding Agencies
- National Human Genome Research Institute Grants
- Department of Energy Human Genome Program [genomics.energy.gov]
- The Wellcome Trust [wellcome.ac.uk]
- National Institutes of Health [nih.gov]
- National Science Foundation [nsf.gov]
- United States Department of Agriculture:
Agricultural Research Service [ars.usda.gov]
Cooperative State Research, Education and Extension Service [csrees.usda.gov]
Additional Genome Resources
- Basic Local Alignment Search Tool (BLAST) [blast.ncbi.nlm.nih.gov]
- NCBI Genomes Guide [ncbi.nlm.nih.gov]
- Ensembl Genome Browser Explore the Human Genome [ensembl.org]
Biology Resources
- Biolinks [mcb.harvard.edu]
- Entrez Cross-database Search [ncbi.nlm.nih.gov]
- PubMed Biomedical Literature Database [ncbi.nlm.nih.gov]
Selected Journals
- Cell [cell.com]
- Genome Research [genome.cshlp.org]
- Journal of Biological Chemistry [jbc.org]
- Journal of Molecular Biology [sciencedirect.com]
- Nature [nature.com]
- Nature Genetics [nature.com]
- Science [sciencemag.org]
Last Updated: October 13, 2011
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