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Approved Sequencing Targets

Please note: To review a list and database of the previous approved sequencing targets, see: www.genome.gov/10002154/approved-sequencing-targets-archive.

Status Approved Sequencing Targets

Center Active / Historical Proposal or Project Name Sub-Project Name Common Name (Species Name), Tumor Type, Phenotype, or Disease Data Type Name registered in dbGap/ BioProject Capacity needed for project (Gb) % sequencing complete Project Finished? Human / Non-Human
WASHU ACTIVE 1000 Genomes Full Scale   Whole exome PRJNA28889 7850 100% Yes Human
BAYLOR ACTIVE 1000 Genomes Full Scale   Whole exome PRJNA59773 3193 100% Yes Human
WASHU ACTIVE 1000 Genomes Full Scale   Whole genome PRJNA28889 5650 100% Yes Human
BAYLOR ACTIVE 1000 Genomes Full Scale   Whole genome PRJNA59771 4050 100% Yes Human
BROAD ACTIVE 1000 Genomes Phase 2   Whole exome     100% Yes Human
BROAD ACTIVE 1000 Genomes Phase 2   Whole genome     100% Yes Human
BROAD ACTIVE 1000 Genomes Phase 3   Whole exome     100% Yes Human
BROAD ACTIVE 1000 Genomes Phase 3   Whole genome     100% Yes Human
BROAD ACTIVE 1000 Genomes Phase 3 Validation   Whole exome     100% Yes Human
BROAD ACTIVE 1000 Genomes Phase 3 Validation   Whole genome     100% Yes Human
BROAD ACTIVE 1000 Genomes Pilot + Phase 1   Whole exome     100% Yes Human
BROAD ACTIVE 1000 Genomes Pilot + Phase 1   Whole genome     100% Yes Human
BAYLOR ACTIVE Age-related Brain MRI & Cognitive Change     Whole exome PRJNA252586 24000 93% No Human
WASHU ACTIVE Aggressive Prostate Carcinoma   Prostate Cancer Targeted sequencing (non-exome) dbGaP study phs000661 800 51% No Human
WASHU ACTIVE Aggressive Prostate Carcinoma   Prostate Cancer Transcriptome, RNA, cDNA dbGaP study phs000661 1250 59% No Human
WASHU ACTIVE Aggressive Prostate Carcinoma   Prostate Cancer Whole exome dbGaP study phs000661 10000 96% No Human
WASHU ACTIVE Aggressive Prostate Carcinoma   Prostate Cancer Whole genome dbGaP study phs000661 12750 96% No Human
WASHU ACTIVE Allelic Spectrum of Common Disease   Age-related macular degeneration Targeted sequencing (non-exome) dbGaP study phs000685 11000 94% No Human
WASHU ACTIVE Allelic Spectrum of Common Disease   Diabetes Targeted sequencing (non-exome) PRJNA75933 and dbGaP phs000276 10000 99% No Human
WASHU ACTIVE Allelic Spectrum of Common Disease   Diabetes Whole exome PRJNA75933 and dbGaP phs000100/phs00 1000 90% No Human
WASHU ACTIVE Allelic Spectrum of Common Disease   Metabolic syndrome Targeted sequencing (non-exome) PRJNA75933 and dbGaP phs000276 19000 96% No Human
WASHU ACTIVE Allelic Spectrum of Common Disease   Metabolic syndrome Whole exome PRJNA75933 and dbGaP phs000276 2000 87% No Human
BROAD ACTIVE Allelic Spectrum of Common Disease   Schizophrenia Whole exome pHS000473   100% No Human
BROAD ACTIVE Allelic Spectrum of Common Disease   Schizophrenia Whole exome   24129 51% No Human
BROAD ACTIVE Allelic Spectrum of Common Disease   Schizophrenia Whole genome     6% No Human
BROAD ACTIVE Alzheimer's Disease Sequencing Project Family studies Alzheimer's Disease Whole exome phs000572 Alzheimer's Disease Sequencing Project (ADSP) 32382 99% No Human
BROAD ACTIVE Alzheimer's Disease Sequencing Project Family studies Alzheimer's Disease Whole genome phs000572 Alzheimer's Disease Sequencing Project (ADSP) 21945 100% No Human
BAYLOR ACTIVE Alzheimer's Disease Sequencing Project Full Scale Alzheimer's Disease Whole exome PRJNA205518 17500 99% No Human
BAYLOR ACTIVE Alzheimer's Disease Sequencing Project Full Scale Alzheimer's Disease Whole genome PRJNA205518 19554 100% No Human
WASHU ACTIVE Alzheimer's Disease Sequencing Project   Alzheimer's Disease Whole exome PRJNA155369; dbGaP phs000572 39375 53% No Human
WASHU ACTIVE Alzheimer's Disease Sequencing Project   Alzheimer's Disease Whole genome PRJNA155369; dbGaP phs000572 22230 99% No Human
BAYLOR ACTIVE Breast Cancer   Breast Cancer Transcriptome, RNA, cDNA phs000770.v1.p1 27 100% No Human
BAYLOR ACTIVE Breast Cancer   Breast Cancer Whole exome phs000770.v1.p1 885 100% No Human
BAYLOR ACTIVE Breast Cancer   Breast Cancer Whole genome phs000770.v1.p1 27 100% No Human
WASHU ACTIVE Breast Cancer Post-Treatment   Breast Cancer Targeted sequencing (non-exome) PRJNA89531, phs000472 1000 94% No Human
WASHU ACTIVE Breast Cancer Post-Treatment   Breast Cancer Whole genome PRJNA89531, phs000472 5500 96% No Human
WASHU ACTIVE Breast Cancer Susceptibility   Breast Cancer Targeted sequencing (non-exome) PRJNA248436 2000 0% No Human
WASHU ACTIVE Breast Cancer Susceptibility   Breast Cancer Whole exome PRJNA248436 5200 100% No Human
WASHU ACTIVE Breast Cancers and their Xenotransplants   Breast Cancer Targeted sequencing (non-exome) dbGaP study phs000611 150 98% No Human
WASHU ACTIVE Breast Cancers and their Xenotransplants   Breast Cancer Whole genome dbGaP study phs000611 7310 100% No Human
BROAD ACTIVE CLL Genomics   Chronic Lymphocytic Leukemia Whole exome phs000435.v1.p1 12114 49% No Human
WASHU ACTIVE Cleft Lip   Cleft Lip and palate Whole exome phs000625     No Human
BROAD ACTIVE Diabetes Multiethnic Cohort   Diabetes Whole exome Multiple     Yes Human
BROAD ACTIVE Early Onset Myocardial Infarction   Early Onset Myocardial Infarction Whole exome     69% No Human
WASHU ACTIVE Finn-Seq FINRISK Cohort   Cardiometabolic Syndrome Whole exome PRJNA247963 32000   No Human
WASHU ACTIVE Finn-Seq METSIM Cohort   Cardiometabolic Syndrome Whole exome PRJNA248458 32000   No Human
BROAD ACTIVE Finnish Alzheimer's Disease Exome Sequencing   Alzheimer's Disease Whole exome Will be deposited in EGA     No Human
WASHU ACTIVE GEI GWASeq   Cleft Lip Targeted sequencing (non-exome) dbGap phs000625 6000 93% No Human
BAYLOR ACTIVE GEI Studies   Colon Cancer Targeted sequencing (non-exome)   5353 100% No Human
BAYLOR ACTIVE GEI Studies   Psoriasis Targeted sequencing (non-exome) PRJNA253636 6269 100% No Human
BAYLOR ACTIVE Genetic Architecture of Common Chronic Disease     Whole exome PRJNA252586 30000 84% No Human
BAYLOR ACTIVE Genetic Architecture of Common Chronic Disease     Whole genome PRJNA252586 19000 45% No Human
WASHU ACTIVE Genome Reference Constortium     BACs, clones, linked-pair libraries PRJNA29893 150 4% No Human
BAYLOR ACTIVE Genomic Analysis of Newborns     Whole exome   7200 2% No Human
WASHU ACTIVE Genomics of Cyclin E Localization in Breast Cancer Cells   Breast Cancer Transcriptome, RNA, cDNA       No Human
WASHU ACTIVE Genomics of Cyclin E Localization in Breast Cancer Cells   Breast Cancer Whole genome       No Human
BROAD ACTIVE Germline Cancer   Germline Cancer Whole exome     100% No Human
BAYLOR ACTIVE Hepatocellular Carcinoma   Hepatocellular Carcinoma Transcriptome, RNA, cDNA PRJNA169342 165 100% No Human
BAYLOR ACTIVE Hepatocellular Carcinoma   Hepatocellular Carcinoma Whole exome PRJNA169342 4644 100% No Human
BAYLOR ACTIVE Hepatocellular Carcinoma   Hepatocellular Carcinoma Whole genome PRJNA169342 1000 97% No Human
WASHU ACTIVE Hepatocellular Carcinoma   Liver Cancer Targeted sequencing (non-exome) PRJNA247815 684 87% No Human
WASHU ACTIVE Hepatocellular Carcinoma   Liver Cancer Transcriptome, RNA, cDNA PRJNA247815 2500 96% No Human
WASHU ACTIVE Hepatocellular Carcinoma   Liver Cancer Whole genome PRJNA247815 10000 97% No Human
WASHU ACTIVE High Risk Neuroblastoma   Neuroblastoma Whole genome       No Human
WASHU ACTIVE Human Microbiome Project 16S Metagenomic Sequencing   16S PRJNA43021, PRJNA48489     No Human
WASHU ACTIVE Human Microbiome Project Reference Genomes   Whole genome PRJNA43021, PRJNA28331     No Human
WASHU ACTIVE Human Microbiome Project Shotgun Metagenomic Sequencing   Whole genome PRJNA43021, PRJNA43017     No Human
WASHU ACTIVE Human Microbiome Project Transcriptome Sequencing   Transcriptome, RNA, cDNA PRJNA43021     No Human
WASHU ACTIVE Human Microbiome Project Virus Reference Genomes   Whole genome PRJNA43021, PRJNA28331     No Human
BAYLOR ACTIVE Hydroxyurea in Sickle Cell Disease   Sickle Cell Whole exome PRJNA232740 4800 72% No Human
BAYLOR ACTIVE Hydroxyurea in Sickle Cell Disease   Sickle Cell Whole genome PRJNA232740 1127 100% No Human
BROAD ACTIVE IBD   IBD Whole exome       No Human
WASHU ACTIVE Lung Adenocarcinoma in Never Smokers   Lung Cancer (Never Smokers) Whole exome PRJNA247969     No Human
WASHU ACTIVE Lung Cancer Susceptibility in Smokers   Lung Cancer (Smokers) Whole exome PRJNA242215 2000 13% No Human
WASHU ACTIVE Male Infertility   Male Infertility Targeted sequencing (non-exome) PRJNA247999 2700 97% No Human
BROAD ACTIVE Mendelian Consortium   Hirschsprung_Disease Whole exome phs000497.v1.p1   100% No Human
BROAD ACTIVE Mendelian Consortium   Human Hematopoiesis Genetics Whole exome phs000474.v1.p1   100% No Human
BROAD ACTIVE Mendelian Consortium   Inherited Muscle Disease Whole exome phs000655.v1.p1 (North); in progress for other cohorts   81% No Human
BROAD ACTIVE Microbial transmissions within human communities (Fiji Comparative)   Microbial transmissions within human communities 16S PRJNA217052   100% No Human
BAYLOR ACTIVE Mining of Legacy Samples     Whole exome   9600 76% No Human
WASHU ACTIVE Molecular Basis of Breast Cancer   Breast Cancer Transcriptome, RNA, cDNA PRJNA247967 2280 1% No Human
WASHU ACTIVE Molecular Basis of Breast Cancer   Breast Cancer Whole genome PRJNA247967 20000 1% No Human
BROAD ACTIVE NIMH/NHGRI Autism Project   Autism Whole exome phs000298.v1.p1 56000 22% No Human
WASHU ACTIVE Neoadjuvant Trastuzumab Response in Breast Cancer   Breast Cancer Transcriptome, RNA, cDNA PRJNA252719 1000 0% No Human
WASHU ACTIVE Neoadjuvant Trastuzumab Response in Breast Cancer   Breast Cancer Whole genome PRJNA252719 17000 0% No Human
BROAD ACTIVE Neurodevelopmental Disorders ciliopathies ciliopathies Whole exome phs000288.v1.p1   99% No Human
BAYLOR ACTIVE Obesity and Diabetes Familial Risk   Obesity and Diabetes Whole exome PRJNA190072 4152 100% No Human
BAYLOR ACTIVE Pancreatic Cancer   Pancreas Whole exome PRJNA171808 3539 100% No Human
BAYLOR ACTIVE Piloting Discovery of Mendelian Disease   Mendelian Disease Whole exome   2821 100% Yes Human
WASHU ACTIVE Progression of Relapsed Small Cell Lung Cancer   Lung Cancer Transcriptome, RNA, cDNA PRJNA248450 1950 22% No Human
WASHU ACTIVE Progression of Relapsed Small Cell Lung Cancer   Lung Cancer Whole exome PRJNA248450 825 53% No Human
BAYLOR ACTIVE Rare Cancer   Multiple tumor types Transcriptome, RNA, cDNA PRJNA241050 259 100% No Human
BAYLOR ACTIVE Rare Cancer   Multiple tumor types Whole exome PRJNA241050 9000 45% No Human
WASHU ACTIVE Rare Human Phenotypes   Rare Human Phenotypes Whole exome PRJNA247989 400 0% No Human
BROAD ACTIVE Resistance and Response Resistance Bladder cancer Whole exome   651 100% No Human
BROAD ACTIVE Resistance and Response Resistance Breast cancer Transcriptome, RNA, cDNA       No Human
BROAD ACTIVE Resistance and Response Resistance Breast cancer Whole exome   588 94% No Human
BROAD ACTIVE Resistance and Response Resistance Breast cancer Whole exome       No Human
BROAD ACTIVE Resistance and Response Resistance Colorectal cancer Transcriptome, RNA, cDNA   49 0% No Human
BROAD ACTIVE Resistance and Response Resistance Colorectal cancer Whole exome   70 0% No Human
BROAD ACTIVE Resistance and Response Resistance Lung cancer Transcriptome, RNA, cDNA   14 0% No Human
BROAD ACTIVE Resistance and Response Resistance Lung cancer Whole exome   35 0% No Human
BROAD ACTIVE Resistance and Response Resistance Melanoma Transcriptome, RNA, cDNA phs000452 Melanoma Sequencing Project 77 100% No Human
BROAD ACTIVE Resistance and Response Resistance Melanoma Transcriptome, RNA, cDNA phs000452 Melanoma Sequencing Project 189 96% No Human
BROAD ACTIVE Resistance and Response Resistance Melanoma Transcriptome, RNA, cDNA phs000452 Melanoma Sequencing Project 1050 0% No Human
BROAD ACTIVE Resistance and Response Resistance Melanoma Whole exome phs000452 Melanoma Sequencing Project 1036 100% No Human
BROAD ACTIVE Resistance and Response Resistance Melanoma Whole exome phs000452 Melanoma Sequencing Project 2100 0% No Human
BROAD ACTIVE Resistance and Response Resistance Melanoma Whole exome phs000452 Melanoma Sequencing Project 154 100% No Human
BROAD ACTIVE Resistance and Response Resistance Renal cell carcinoma Transcriptome, RNA, cDNA       No Human
BROAD ACTIVE Resistance and Response Resistance Renal cell carcinoma Whole exome   126 0% No Human
BROAD ACTIVE Resistance and Response Resistance Testicular cancer Whole exome   539 0% No Human
WASHU ACTIVE Resistance in Non-small Cell Lung Cancer   Lung Cancer Targeted sequencing (non-exome) PRJNA248470 150 30% No Human
WASHU ACTIVE Resistance in Non-small Cell Lung Cancer   Lung Cancer Transcriptome, RNA, cDNA PRJNA248470 1950   No Human
WASHU ACTIVE Resistance in Non-small Cell Lung Cancer   Lung Cancer Whole genome PRJNA248470 13500 17% No Human
WASHU ACTIVE Sickle Cell Disease   Sickle Cell Patients with Strokes Whole exome PRJNA247991 3800 4% No Human
BAYLOR ACTIVE South African Schizophrenia   Schizophrenia Whole exome   6000 4% No Human
WASHU ACTIVE Spontaneous Amyotrophic Lateral Sclerosis (ALS)   Spontaneous Amyotrophic Lateral Sclerosis (ALS) Targeted sequencing (non-exome) PRJNA248442 250 76% No Human
WASHU ACTIVE Spontaneous Amyotrophic Lateral Sclerosis (ALS)   Spontaneous Amyotrophic Lateral Sclerosis (ALS) Transcriptome, RNA, cDNA PRJNA248442 1000 74% No Human
WASHU ACTIVE Spontaneous Amyotrophic Lateral Sclerosis (ALS)   Spontaneous Amyotrophic Lateral Sclerosis (ALS) Whole genome PRJNA248442 3900 96% No Human
BAYLOR ACTIVE TCGA Breast Benchmark Breast Transcriptome, RNA, cDNA PRJNA74949 61 100% No Human
BAYLOR ACTIVE TCGA Breast Benchmark Breast Whole genome PRJNA74949 427 100% No Human
BROAD ACTIVE TCGA TCGA Whole Genome Sequencing Multiple Tumor Types Whole genome cgHUB 85580 100% No Human
BAYLOR ACTIVE TCGA   Adrenocortical carcinoma Whole exome PRJNA74949 1835 100% No Human
BAYLOR ACTIVE TCGA   B-cell Lymphoma Whole exome PRJNA74949 9000 6% No Human
BAYLOR ACTIVE TCGA   B-cell Lymphoma Whole genome PRJNA74949 2182 100% No Human
WASHU ACTIVE TCGA   Breast Targeted sequencing (non-exome) PRJNA74949 800 73% No Human
WASHU ACTIVE TCGA   Breast Whole exome PRJNA74949 19500 86% No Human
WASHU ACTIVE TCGA   Breast Whole genome PRJNA74949 29000 47% No Human
WASHU ACTIVE TCGA   Cervical Targeted sequencing (non-exome) PRJNA74949 50 2% No Human
WASHU ACTIVE TCGA   Cervical Whole exome PRJNA74949 4000 74% No Human
WASHU ACTIVE TCGA   Cervical Whole genome PRJNA74949 6000 100% No Human
BAYLOR ACTIVE TCGA   Colon Whole exome PRJNA74949 14314 100% Yes Human
BAYLOR ACTIVE TCGA   Colon Whole genome PRJNA74949 15000 99% Yes Human
WASHU ACTIVE TCGA   Endometrial Targeted sequencing (non-exome) PRJNA74949 1500 41% No Human
WASHU ACTIVE TCGA   Endometrial Whole exome PRJNA74949 11000 61% No Human
WASHU ACTIVE TCGA   Endometrial Whole genome PRJNA74949 16000 62% No Human
WASHU ACTIVE TCGA   Esophageal Whole exome PRJNA74949 5000 0% No Human
WASHU ACTIVE TCGA   Esophageal Whole genome PRJNA74949 6300 0% No Human
WASHU ACTIVE TCGA   GBM Whole genome PRJNA74949 6000 64% No Human
BAYLOR ACTIVE TCGA   Head and Neck Whole genome PRJNA74949 12214 100% Yes Human
BAYLOR ACTIVE TCGA   Kidney Chromophobe Whole exome PRJNA74949 1312 100% Yes Human
BAYLOR ACTIVE TCGA   Kidney Chromophobe Whole genome PRJNA74949 4821 100% Yes Human
BAYLOR ACTIVE TCGA   Kidney Papillary Whole exome PRJNA74949 2250 72% No Human
BAYLOR ACTIVE TCGA   Kidney Papillary Whole genome PRJNA74949 3418 100% No Human
BAYLOR ACTIVE TCGA   Liver Whole exome PRJNA74949 9000 62% No Human
BAYLOR ACTIVE TCGA   Liver Whole genome PRJNA74949 16000 17% No Human
WASHU ACTIVE TCGA   Ovarian Targeted sequencing (non-exome) PRJNA74949 200 83% No Human
WASHU ACTIVE TCGA   Ovarian Whole exome PRJNA74949 8600 100% No Human
BAYLOR ACTIVE TCGA   Ovarian Whole genome PRJNA74949 6000 91% Yes Human
WASHU ACTIVE TCGA   Ovarian Whole genome PRJNA74949 50 84% No Human
BAYLOR ACTIVE TCGA   Rectal Whole exome PRJNA74949 5000 93% Yes Human
BAYLOR ACTIVE TCGA   Rectal Whole genome PRJNA74949 4655 100% Yes Human
BAYLOR ACTIVE TCGA   Renal Whole exome PRJNA74949 7049 100% Yes Human
BAYLOR ACTIVE TCGA   Renal Whole genome PRJNA74949 16200 68% Yes Human
WASHU ACTIVE TCGA   Sarcoma Whole exome PRJNA74949 5000 68% No Human
WASHU ACTIVE TCGA   Sarcoma Whole genome PRJNA74949 16500 61% No Human
WASHU ACTIVE Transition from Pre-Invasive to Invasive Cervical Cancer   Cervical Whole genome       No Human
WASHU ACTIVE Treatment Response and Survival in Prostate Cancer   Prostate Cancer Transcriptome, RNA, cDNA       No Human
WASHU ACTIVE Tumor Sequencing Project   AML Targeted sequencing (non-exome) PRJNA74781, phs000159.v4.p2 800 74% No Human
WASHU ACTIVE Tumor Sequencing Project   AML Transcriptome, RNA, cDNA PRJNA74781, phs000159.v4.p2 600 87% No Human
WASHU ACTIVE Tumor Sequencing Project   AML Whole exome PRJNA74781, phs000159.v4.p2 50 76% No Human
WASHU ACTIVE Tumor Sequencing Project   AML Whole genome PRJNA74781, phs000159.v4.p2 3000 82% No Human
BROAD ACTIVE Tumor Sequencing Project   Aggressive Prostate Carcinoma Transcriptome, RNA, cDNA phs000447.v1.p1 (Prostate Cancer Genome Sequencing Project)     No Human
BROAD ACTIVE Tumor Sequencing Project   Aggressive Prostate Carcinoma Whole genome phs000447     No Human
BROAD ACTIVE Tumor Sequencing Project   Brain Mets Whole exome   4950 48% No Human
BROAD ACTIVE Tumor Sequencing Project   Brain Mets Whole exome   2304 67% No Human
WASHU ACTIVE Tumor Sequencing Project   Breast Cancer Targeted sequencing (non-exome) PRJNA89531 1500 93% No Human
WASHU ACTIVE Tumor Sequencing Project   Breast Cancer Transcriptome, RNA, cDNA PRJNA89531 50 36% No Human
WASHU ACTIVE Tumor Sequencing Project   Breast Cancer Whole exome PRJNA89531 100 62% No Human
WASHU ACTIVE Tumor Sequencing Project   Breast Cancer Whole genome PRJNA89531 19000 96% No Human
BROAD ACTIVE Tumor Sequencing Project   Breast cancer: epidemiology Whole exome       No Human
BROAD ACTIVE Tumor Sequencing Project   Colon cancer: epidemiology Whole exome phs000722.v1.p1 22200 4% No Human
BROAD ACTIVE Tumor Sequencing Project   Esophageal Adenocarcinoma Whole exome phs000598.v2.p2 Exome Sequencing of Esophageal Adenocarcinoma     Yes Human
BROAD ACTIVE Tumor Sequencing Project   Melanoma, Uveal Whole exome phs000452 1387 78% No Human
BROAD ACTIVE Tumor Sequencing Project   Mesothelioma Whole exome   555 100% No Human
BROAD ACTIVE Tumor Sequencing Project   Prostate Cancer in African Americans Whole exome phs000447 3241 39% No Human
BROAD ACTIVE Tumor Sequencing Project   Prostate Cancer in African Americans Whole exome phs000447     No Human
BROAD ACTIVE Tumor Sequencing Project   Prostate Cancer, Small Cell Whole exome       No Human
BROAD ACTIVE Type 2 Diabetes Exome Sequencing   Diabetes Whole exome     100% No Human
BAYLOR ACTIVE 200 Mammals   Killer whale (Orcinus orca) Whole genome PRJNA167475 122 100% Yes Non-Human
BAYLOR ACTIVE 200 Mammals   Walrus (Odobenus rosmarus) Whole genome PRJNA167474 600 100% Yes Non-Human
BAYLOR ACTIVE Adder Snake   Adder Snake (Vipera berus) Whole genome PRJNA170536 119 100% No Non-Human
WASHU ACTIVE Anthelmintic Resistance in Parasitic Nematodes Drug resistant isolates of Cooperia punctata Cooperia punctata Transcriptome, RNA, cDNA PRJNA219635 100 39% No Non-Human
WASHU ACTIVE Anthelmintic Resistance in Parasitic Nematodes Drug resistant isolates of Necator americanus New World hookworm (Necator americanus) Whole genome PRJNA219639 100 100% No Non-Human
WASHU ACTIVE Anthelmintic Resistance in Parasitic Nematodes Drug resistant isolates of Telodorsagia circumcincta Brown stomach worm (Telodorsagia circumcincta) Whole genome PRJNA219637 100 65% No Non-Human
BROAD ACTIVE Canine Tumor Sequencing - Pilot Project Lymphoma Canis familiaris/Dog Whole exome PRJNA247491     No Non-Human
BROAD ACTIVE Canine Tumor Sequencing - Pilot Project Lymphoma Canis familiaris/Dog Whole genome PRJNA247491   100% No Non-Human
BROAD ACTIVE Canine Tumor Sequencing - Pilot Project Melanoma Canis familiaris/Dog Whole exome PRJNA247491     No Non-Human
BROAD ACTIVE Canine Tumor Sequencing - Pilot Project Osteosarcoma Canis familiaris/Dog Whole exome PRJNA247491     No Non-Human
BROAD ACTIVE Canine Tumor Sequencing - Pilot Project Osteosarcoma Canis familiaris/Dog Whole genome PRJNA247491   100% No Non-Human
WASHU ACTIVE Community Aquired MRSA Infection   CA-MRSA Whole exome PRJNA247964 5000 31% No Non-Human
WASHU ACTIVE Community Aquired MRSA Infection   MRSA Bacteria Whole genome PRJNA247964 1100 2% No Non-Human
BROAD ACTIVE Defining the Transcriptome of Nine Vertebrate Genomes Using RNA-Seq   Multiple Transcriptome, RNA, cDNA Multiple     Yes Non-Human
BROAD ACTIVE Dog   Canis familiaris/Dog BACs, clones, linked-pair libraries     100% No Non-Human
WASHU ACTIVE Ecdysozoan Sequencing   Marine Worm (Priapulus caudatus) Transcriptome, RNA, cDNA PRJNA20497 50 12% No Non-Human
WASHU ACTIVE Ecdysozoan Sequencing   Marine Worm (Priapulus caudatus) Whole genome PRJNA20497 200 72% No Non-Human
BAYLOR ACTIVE Echinoderm Sequencing Brittle Star Genome Spiny brittle star (Ophiothrix spiculata) Whole genome PRJNA182997 340 100% No Non-Human
BAYLOR ACTIVE Echinoderm Sequencing Green Sea Urchin Genome Green Sea urchin (Lytechinus variegatus) Whole genome PRJNA62399 40 100% No Non-Human
BAYLOR ACTIVE Echinoderm Sequencing Sea Cucumber Genome Warty Sea Cucumber (Parastichopus parvimensis) Whole genome PRJNA182998 190 100% No Non-Human
BROAD ACTIVE Evolution of the Human Proteome   Latimeria chalumnae/Coelacanth Whole genome PRJNA56111   100% No Non-Human
BROAD ACTIVE Evolution of the Human Proteome   Lepisosteus oculatus/Spotted gar Transcriptome, RNA, cDNA PRJNA247500   100% No Non-Human
BROAD ACTIVE Evolution of the Human Proteome   Lepisosteus oculatus/Spotted gar Whole genome PRJNA68247   100% No Non-Human
WASHU ACTIVE Food-Bourne Trematodiases   Blood Fluke (Schistosoma mansoni) Transcriptome, RNA, cDNA PRJNA247810 80 2% No Non-Human
WASHU ACTIVE Food-Bourne Trematodiases   Human lung fluke (Paragonimus westermani) Whole genome PRJNA219632 150 16% No Non-Human
WASHU ACTIVE Food-Bourne Trematodiases   Liver fluke (Opisthorchis viverrini) Whole genome PRJNA230518 100 16% No Non-Human
WASHU ACTIVE Food-Bourne Trematodiases   Lung fluke (Paragonimus kellicotti) Whole genome PRJNA179523 250 91% No Non-Human
WASHU ACTIVE Food-Bourne Trematodiases   Lung fluke (Paragonimus miyazakii) Transcriptome, RNA, cDNA PRJNA245325 100 59% No Non-Human
WASHU ACTIVE Food-Bourne Trematodiases   Lung fluke (Paragonimus miyazakii) Whole genome PRJNA245325 100 34% No Non-Human
WASHU ACTIVE Food-Bourne Trematodiases   Sheep liver fluke (Fasciola gigantica) Whole genome PRJNA230515 150 36% No Non-Human
WASHU ACTIVE Food-Bourne Trematodiases   Sheep liver fluke (Fasciola hepatica) Transcriptome, RNA, cDNA PRJNA179522 50 76% No Non-Human
WASHU ACTIVE Food-Bourne Trematodiases   Sheep liver fluke (Fasciola hepatica) Whole genome PRJNA179522 400 94% No Non-Human
BROAD ACTIVE Fungal Genome Initiative   Black Yeasts Whole genome PRJNA76691   42% No Non-Human
BROAD ACTIVE Fungal Genome Initiative   Cryptococcus neoformans, serotype A and B Whole genome PRJNA89741?   100% No Non-Human
WASHU ACTIVE Genetic Model for Vertebrate Development   Common Garter Snake (Thamnophis sirtalis) Transcriptome, RNA, cDNA PRJNA189551 200 0% No Non-Human
WASHU ACTIVE Genetic Model for Vertebrate Development   Common Garter Snake (Thamnophis sirtalis) Whole genome PRJNA189551 400 85% No Non-Human
BAYLOR ACTIVE Genetic Variation in Essential Laboratory Primates   Rhesus Macaque (Macaca mulatta) and Cynomolgus Macaque (Macaca fascicularis) Whole exome PRJNA251548  156 100% No Non-Human
BAYLOR ACTIVE Genetic Variation in Essential Laboratory Primates   Rhesus Macaque (Macaca mulatta) and Cynomolgus Macaque (Macaca fascicularis) Whole genome PRJNA251548  11909 100% No Non-Human
BROAD ACTIVE Genomic Basis of Vertebrate Diversity   Gasterosteus aculeatus/Stickleback Whole genome PRJNA247503   100% No Non-Human
WASHU ACTIVE Hookworm   New World hookworm (Necator americanus Anhui) Transcriptome, RNA, cDNA PRJNA72135 25 76% No Non-Human
WASHU ACTIVE Hookworm   New World hookworm (Necator americanus Anhui) Whole genome PRJNA72135 50 46% No Non-Human
WASHU ACTIVE Host Immunological Markers     Transcriptome, RNA, cDNA   750   No Non-Human
WASHU ACTIVE Host Parasite Interaction     Transcriptome, RNA, cDNA   150   No Non-Human
BROAD ACTIVE Human Microbiome Project Human Microbiome Project -Eukaryotes Reference Genomes Whole genome SRA STOOL06P6B   100% No Non-Human
BAYLOR ACTIVE I5K   Multiple species Transcriptome, RNA, cDNA PRJNA163973 600 52% No Non-Human
BAYLOR ACTIVE I5K   Multiple species Whole genome PRJNA163973 4953 100% No Non-Human
BAYLOR ACTIVE Identification of Mutation in a Rat Model for Human Parkinson’s Disease   Parkinson's Disease Whole genome PRJNA253728 475 100% No Non-Human
WASHU ACTIVE Infectious Disease Genomics Initiative BK Virus Nephropathy   Whole genome   100   No Non-Human
WASHU ACTIVE Infectious Disease Genomics Initiative Clostridium difficile Hospital Infection Control Clostridium difficile Whole genome   1600 22% No Non-Human
WASHU ACTIVE Infectious Disease Genomics Initiative Influenza A Influenza A Whole genome   100 0% No Non-Human
WASHU ACTIVE Infectious Disease Genomics Initiative Influenza B Influenza B Whole genome   100 1% No Non-Human
WASHU ACTIVE Infectious Disease Genomics Initiative RBEL Microbiome   Whole genome   100   No Non-Human
WASHU ACTIVE Infectious Disease Genomics Initiative Rotavirus   Whole genome   100   No Non-Human
WASHU ACTIVE Infectious Disease Genomics Initiative Short Bowel Microbiome   Whole genome   100   No Non-Human
WASHU ACTIVE Mouse Models of Human Cancers Genetic Model for Oral Cancer Oral Cancer Whole exome PRJNA247825 90 89% No Non-Human
WASHU ACTIVE Mouse Models of Human Cancers Inducible Mouse Models of Human Colon Cancer Colon Cancer Transcriptome, RNA, cDNA PRJNA247961 1200 34% No Non-Human
WASHU ACTIVE Mouse Models of Human Cancers Inducible Mouse Models of Human Colon Cancer Colon Cancer Whole genome PRJNA247961 6000 81% No Non-Human
WASHU ACTIVE Mouse Models of Human Cancers Murine STAT1 deficient ER positive Luminal Mammary Tumors Breast Cancer Whole genome PRJNA248457 8000 85% No Non-Human
WASHU ACTIVE Mouse Models of Human Cancers TP53 Knock out Models of Human Breast Cancer Breast Cancer Whole exome PRJNA247955 350 81% No Non-Human
WASHU ACTIVE Mouse Models of Human Cancers TP53 Knock out Models of Human Breast Cancer Breast Cancer Whole genome PRJNA247955 1000 95% No Non-Human
WASHU ACTIVE Mouse Models of Human Cancers 2 Mouse Models of Sarcoma Targeting Kras and p53 Sarcoma Targeted sequencing (non-exome) PRJNA248466 100 52% No Non-Human
WASHU ACTIVE Mouse Models of Human Cancers 2 Mouse Models of Sarcoma Targeting Kras and p53 Sarcoma Transcriptome, RNA, cDNA PRJNA248466 100 35% No Non-Human
WASHU ACTIVE Mouse Models of Human Cancers 2 Mouse Models of Sarcoma Targeting Kras and p53 Sarcoma Whole exome PRJNA248466 640 5% No Non-Human
WASHU ACTIVE Mouse Models of Lung Cancer   Lung Cancer Whole genome       No Non-Human
BROAD ACTIVE Mouse Models of colitis   Mouse Models of colitis Whole genome PRJNA176009   100% No Non-Human
BROAD ACTIVE Mouse Mutant Resequencing Initiative   Mus musculus/Mouse Targeted sequencing (non-exome) PRJNA247497     No Non-Human
BROAD ACTIVE Mouse Mutant Resequencing Initiative   Mus musculus/Mouse Whole exome PRJNA247497 546 56% No Non-Human
BROAD ACTIVE Multiple Mammalian Genomes for Comparative Genome Annotation Elephant diversity project Loxodonta africana/Elephant Whole genome PRJNA247496   100% No Non-Human
BROAD ACTIVE Multiple Mammalian Genomes for Comparative Genome Annotation Elephant reference genome Loxodonta africana/Elephant Whole genome PRJNA12569   100% No Non-Human
BROAD ACTIVE Multiple Mammalian Genomes for Comparative Genome Annotation Rabbit diversity project Oryctolagus cuniculus/Rabbit Whole genome PRJNA242290   100% No Non-Human
BROAD ACTIVE Multiple Mammalian Genomes for Comparative Genome Annotation Rabbit reference genome Oryctolagus cuniculus/Rabbit Whole genome PRJNA12819   100% No Non-Human
BAYLOR ACTIVE Multiple Mammalian Genomes for Comparative Genome Annotation Top-up of Remaining 2X Mammals Megabat (Pteropus vampyrus) Whole genome PRJNA20325   100% No Non-Human
BAYLOR ACTIVE Multiple Mammalian Genomes for Comparative Genome Annotation Top-up of Remaining 2X Mammals Ord's kangaroo rat (Dipodomys ordii) Whole genome PRJNA20385 346 100% No Non-Human
BAYLOR ACTIVE Multiple Mammalian Genomes for Comparative Genome Annotation Top-up of Remaining 2X Mammals Rock Hyrax (Procavia capensis) Whole genome PRJNA13972 474 100% No Non-Human
WASHU ACTIVE Multiple Mammalian Genomes for Comparative Genome Annotation   Flying Lemur (Galeopterus variegatus) Transcriptome, RNA, cDNA PRJNA20511 30   No Non-Human
BROAD ACTIVE Origins of multicellularity Amoebidium parasiticum Amoebidium parasiticum Whole genome PRJNA189477   100% No Non-Human
BROAD ACTIVE Origins of multicellularity Ministeria vibrans Ministeria vibrans Whole genome PRJNA39421 20 100% No Non-Human
BROAD ACTIVE Origins of multicellularity   Allomyces macrogynus, Spizellomyces punctatus, Mortierella verticillata, Sphaeroforma arctica, Capsaspora owczarzaki, Thecamonas trahens, Salpingoeca rosetta, Fonticula alba Whole genome PRJNA20563, PRJNA37881, PRJNA20603, PRJNA20463, PRJNA20341, PRJNA37929, PRJNA37927, PRJNA189482,   100% No Non-Human
WASHU ACTIVE Parasitic Nematode Glands     Transcriptome, RNA, cDNA   4 32% No Non-Human
WASHU ACTIVE Pathogen Genomics and Global Health   Metagenomics 16S   10   No Non-Human
WASHU ACTIVE Pathogen Genomics and Global Heath   Ascaris lumbricoides Whole genome PRJNA230513 40 77% No Non-Human
WASHU ACTIVE Pathogen Genomics and Global Heath   Helminths Infections Whole genome   1000   No Non-Human
WASHU ACTIVE Pathogen Genomics and Global Heath   Onchocerca flexuosa Whole genome PRJNA230512 20 66% No Non-Human
WASHU ACTIVE Pathogen Genomics and Global Heath   Onchocerca volvulus Whole genome PRJNA219638 150 87% No Non-Human
WASHU ACTIVE Pathogens and Vectors Glossina Genome Projects Tetse Fly (Glossina austeni) Whole genome PRJNA189552 100 60% No Non-Human
WASHU ACTIVE Pathogens and Vectors Glossina Genome Projects Tetse Fly (Glossina brevipalpis) Transcriptome, RNA, cDNA PRJNA182187 100 75% No Non-Human
WASHU ACTIVE Pathogens and Vectors Glossina Genome Projects Tetse Fly (Glossina brevipalpis) Whole genome PRJNA182187 100 57% No Non-Human
WASHU ACTIVE Pathogens and Vectors Glossina Genome Projects Tetse Fly (Glossina fuscipes) Whole genome PRJNA172853 400 81% No Non-Human
WASHU ACTIVE Pathogens and Vectors Glossina Genome Projects Tetse Fly (Glossina pallidipes) Transcriptome, RNA, cDNA PRJNA184812 50 0% No Non-Human
WASHU ACTIVE Pathogens and Vectors Glossina Genome Projects Tetse Fly (Glossina pallidipes) Whole genome PRJNA184812 100 45% No Non-Human
WASHU ACTIVE Pathogens and Vectors Glossina Genome Projects Tsetse Fly (multiple Glossina) Transcriptome, RNA, cDNA PRJNA188117, PRJNA189552, PRJNA182187, PRJNA172853, PRJNA184812 300 87% No Non-Human
WASHU ACTIVE Pathogens and Vectors Glossina Genome Projects Tsetse Fly (multiple Glossina) Whole genome PRJNA188117, PRJNA189552, PRJNA182187, PRJNA172853, PRJNA184812 500 52% No Non-Human
WASHU ACTIVE Pathogens and Vectors Pathogenomics of Trypanosomatid parasites Trypanosomatid parasites Whole genome PRJNA176381, PRJNA165885, PRJNA59941, PRJNA50301, PRJNA165959, PRJNA169673, PRJNA50299, PRJNA165955, PRJNA169676, PRJNA169675, PRJNA165953, PRJNA169677, PRJNA50303, PRJNA50493, PRJNA192710, PRJNA192711, PRJNA192717, PRJNA165887, PRJNA192703, PRJNA192712, PRJNA198812 400 40% No Non-Human
BROAD ACTIVE Pathogens and Vectors   Genome Analysis of Vectorial Capacity in Major Anopheles Vectors of Malaria Parasites Whole genome PRJNA67129   100% No Non-Human
WASHU ACTIVE Pathogens and Vectors   Sand Fly (Phlebotomus bergeroti) Whole genome PRJNA252709 30 51% No Non-Human
WASHU ACTIVE Pathogens and Vectors   Sand Fly (Phlebotomus duboscqi) Whole genome PRJNA252711 30 55% No Non-Human
WASHU ACTIVE Pathogens and Vectors   Sand Fly (Phlebotomus papatasi) Transcriptome, RNA, cDNA PRJNA20293 100 63% No Non-Human
WASHU ACTIVE Pathogens and Vectors   Sand Fly (Phlebotomus papatasi) Whole genome PRJNA20293 150 94% No Non-Human
WASHU ACTIVE Pathogens and Vectors   Stable Fly (Stomoxys calcitrans) Transcriptome, RNA, cDNA PRJNA188117 100 39% No Non-Human
WASHU ACTIVE Pathogens and Vectors   Stable Fly (Stomoxys calcitrans) Whole genome PRJNA188117 200 87% No Non-Human
BROAD ACTIVE Prairie Vole   Microtus ochrogaster/Prairie vole Whole genome PRJNA72443   100% No Non-Human
BAYLOR ACTIVE Primate Genomes Buff-headed Capuchin Reference Genome Buff-headed capuchin (Cebus xanthrosternos) Whole genome PRJNA249084  600 0% No Non-Human
BAYLOR ACTIVE Primate Genomes Colobus Reference Genome Black colobus (Colobus angolensis) Whole genome PRJNA251421 600 86% No Non-Human
BAYLOR ACTIVE Primate Genomes Drill Reference Genome Drill (Mandrillus leucophaeus) Whole genome PRJNA251423 1000 33% No Non-Human
BAYLOR ACTIVE Primate Genomes Gelada Monkey Reference Genome Gelada monkey (Theropithecus gelada) Whole genome PRJNA251424 600 0% No Non-Human
BAYLOR ACTIVE Primate Genomes Mouse Lemur Diversity Panel Gray mouse lemur (Microcebus murinus) Whole genome PRJNA19967 835 100% No Non-Human
BAYLOR ACTIVE Primate Genomes Mouse Lemur Reference Genome Gray mouse lemur (Microcebus murinus) Whole genome PRJNA19967 465 100% No Non-Human
BAYLOR ACTIVE Primate Genomes Owl Monkey Reference Genome Owl monkey (Aotus nancymaae) Whole genome PRJNA251539  600 0% No Non-Human
BAYLOR ACTIVE Primate Genomes Patas monkey Reference Genome Patas monkey (Erythrocebus patas) Whole genome PRJNA251426  600 0% No Non-Human
BAYLOR ACTIVE Primate Genomes Pig-tailed Macaque Diversity Panel Pig-tailed Macaque (Macaca nemestrina) Whole genome PRJNA251427 458 100% No Non-Human
BAYLOR ACTIVE Primate Genomes Pig-tailed Macaque Reference Genome Pig-tailed Macaque (Macaca nemestrina) Whole genome PRJNA251427 628 100% No Non-Human
BAYLOR ACTIVE Primate Genomes Primate RNAseq Survey Multiple species Transcriptome, RNA, cDNA PRJNA251544 2411 100% No Non-Human
BAYLOR ACTIVE Primate Genomes Sifaka Lemur Diversity Panel Sifaka Lemur (Propithecus coquereli) Whole genome PRJNA251429 749 100% No Non-Human
BAYLOR ACTIVE Primate Genomes Sifaka Lemur Reference Genome Sifaka Lemur (Propithecus coquereli) Whole genome PRJNA251429 592 100% No Non-Human
BAYLOR ACTIVE Primate Genomes Sooty Mangabey Diversity Panel Sooty Mangabey (Cercocebus atys) Whole genome PRJNA157077 728 100% No Non-Human
BAYLOR ACTIVE Primate Genomes Sooty Mangabey Reference Genome Sooty mangabey (Cercocebus atys) Whole genome PRJNA157077 241 100% No Non-Human
BAYLOR ACTIVE Primate Genomes White-fronted Capuchin Reference Genome White-fronted capuchin (Cebus albifrons) Whole genome PRJNA251434 600 0% No Non-Human
WASHU ACTIVE Primate Genomes   Tarsier (Tarsier syrichta) Transcriptome, RNA, cDNA PRJNA20339 50 15% No Non-Human
WASHU ACTIVE Primate Genomes   Vervet (Chlorocebus aethiops) Whole genome PRJNA176010, PRJNA168527, PRJNA168621, PRJNA168522, PRJNA168521, PRJNA168520, PRJNA168472 9000 98% No Non-Human
BROAD ACTIVE Sea slug   Aplysia californica Transcriptome, RNA, cDNA PRJNA77701   100% No Non-Human
BROAD ACTIVE Sea slug   Aplysia californica Whole genome PRJNA13635   100% No Non-Human
WASHU ACTIVE Strongylid Nematode   Bovine Lungworm (Dictyocaulus viviparus) Transcriptome, RNA, cDNA PRJNA72587 155 77% No Non-Human
WASHU ACTIVE Strongylid Nematode   Bovine Lungworm (Dictyocaulus viviparus) Whole genome PRJNA72587 100 37% No Non-Human
WASHU ACTIVE Strongylid Nematode   Bovine Stomach Worm (Ostertagia ostertagi) Transcriptome, RNA, cDNA PRJNA72577 18 56% No Non-Human
WASHU ACTIVE Strongylid Nematode   Bovine Stomach Worm (Ostertagia ostertagi) Whole genome PRJNA72577 200 70% No Non-Human
WASHU ACTIVE Strongylid Nematode   Intestinal Hookworm (Ancylostoma ceylanicum) Transcriptome, RNA, cDNA PRJNA12860 400 77% No Non-Human
WASHU ACTIVE Strongylid Nematode   Nodule Worm (Oesophagostomum dentatum) Transcriptome, RNA, cDNA PRJNA72579, PRJNA20459 120 97% No Non-Human
WASHU ACTIVE Strongylid Nematode   Nodule Worm (Oesophagostomum dentatum) Whole genome PRJNA72579, PRJNA20459 125 60% No Non-Human
WASHU ACTIVE Strongylid Nematode   Small intestinal worm (Cooperia oncophora) Transcriptome, RNA, cDNA PRJNA20299, PRJNA188323 50 36% No Non-Human
WASHU ACTIVE Strongylid Nematode   Small intestinal worm (Cooperia oncophora) Whole genome PRJNA20299, PRJNA72571 140 68% No Non-Human
WASHU ACTIVE Strongylid Nematode   Thread-Necked Worm (Nematodirus battus) Whole genome PRJNA20455, PRJNA86621 100 36% No Non-Human
WASHU ACTIVE Synovial and Clear Cell Sarcoma Mouse Models   Sarcoma Targeted sequencing (non-exome) PRJNA247995 50 0% No Non-Human
WASHU ACTIVE Synovial and Clear Cell Sarcoma Mouse Models   Sarcoma Transcriptome, RNA, cDNA PRJNA247995 250 0% No Non-Human
WASHU ACTIVE Synovial and Clear Cell Sarcoma Mouse Models   Sarcoma Whole exome PRJNA247995 1200 0% No Non-Human
BROAD ACTIVE Tetrahymena comparative genome project   Tetrahymena thermophila, Tetrahymena elliotti, Tetrahymena borealis, Tetrahymena malaccensis Whole genome PRJNA177802   100% No Non-Human
BROAD ACTIVE Tilapia cichlid   Multiple Transcriptome, RNA, cDNA Multiple   100% No Non-Human
BROAD ACTIVE Tilapia cichlid   Multiple Whole genome Multiple   100% No Non-Human
BROAD ACTIVE Trichophyton   T. rubrum Whole genome PRJNA186851   100% No Non-Human
BAYLOR HISTORICAL 1000 Genomes Pilot 1   Whole genome PRJNA28911     Yes Human
BAYLOR HISTORICAL 1000 Genomes Pilot 2   Whole genome PRJNA28919     Yes Human
BAYLOR HISTORICAL 1000 Genomes Pilot 3   Targeted sequencing (non-exome) PRJNA28917     Yes Human
BROAD HISTORICAL 1000 Genomes     Deep sequencing of two mother-father-adult child trios       Yes Human
BROAD HISTORICAL 1000 Genomes     Sequencing ~2X coverage in ~180 individuals       Yes Human
BROAD HISTORICAL 1000 Genomes     Sequencing ~4X coverage in at least 1200 individuals       Yes Human
BROAD HISTORICAL 1000 Genomes     Targeted sequencing of ~1000 gene regions in ~1000 individuals       Yes Human
BAYLOR HISTORICAL ARRA Autism Sequencing Collaboration   Autism Whole exome PRJNA74861     Yes Human
BROAD HISTORICAL Addressing major unanswered questions in prostate cancer   Prostate Cancer   phs000330.v1.p1 The Genomic Complexity of Primary Human Prostate Cancer     Yes Human
BROAD HISTORICAL Allelic Spectrum of Common Disease   Cardiovascular Disease 76 genes in 4286 individuals Framingham Heart Study Allelic Spectrum Project and JHS Allelic Spectrum Project     Yes Human
BAYLOR HISTORICAL Allelic Spectrum of Common Disease   Schizophrenia Targeted sequencing (non-exome)       Yes Human
BROAD HISTORICAL Amish Dystonia & Microcephaly with Chorioretinopathy   Dystonia, Microcephaly with Chorioretinopathy 3 affected individuals and 2 unaffected family members for each disease using exome sequencing phs000623.v1.p1 Rare Mendelian Disease in Old Order Amish and Mennonite Patients     Yes Human
BROAD HISTORICAL Autism       ARRA Autism Sequencing Collaboration     No Human
BROAD HISTORICAL BI Tumor Sequencing Proposal (TSP)   Multiple >5000 T/N pairs by whole exome or genome sequencing         Human
BROAD HISTORICAL Breast and colon cancer in top-tier epidemiologic cohorts and cooperative group trials   Breast Cancer, Colon Cancer   phs000722.v1.p1 Whole Exome Sequencing of Colorectal Cancer Epidemiologic Cohorts     No Human
BROAD HISTORICAL Chronic Lymphocytic Leukemia (CLL)   CLL 91 CLL samples with matched germline controls by exome sequencing         Human
BROAD HISTORICAL Deep extension of exome sequencing in Type 2 Diabetes   Type 2 Diabetes (T2D)   T2D-GENES Exome Sequencing Study in African Americans, Starr County T2D-GENES Exome Sequencing Study, JHS T2D-GENES Exome Sequencing Study, San Antonio Family Studies Substudy- T2d-GENES Exome Sequencing Study , Metabolic Syndrome in Men (METSIM) Study Substudy - METSIM T2D-GENES Exome Sequencing Study Singapore T2D-GENES Exome Sequencing Study Korean Association Resource (KARE) T2D-GENES Exome Sequencing Study UK South Asian T2D-GENES Exome Sequencing Study Ashkenazi T2D-GENES Exome Sequencing Study     Yes Human
BROAD HISTORICAL Drug -Induced Liver Injury   Augmentin induced liver injury (DILI) 75 cases of DILI using exome sequencing       Yes Human
BROAD HISTORICAL Early onset Myocardial Infarction (MI)       MIGen_ExS: Atherosclerosis Thrombosis and Vascular Biology; MIGen_ExS: Ottawa Heart; MIGen_ExS: PROCARDIS; MIGen_ExS: Regicor; MIGen_ExS: German Heart Center in Munich; MIGen_ExS: JHS; MIGen_ExS: PROMIS; MIGen_ExS: University Medical Centre Schleswig-Holstein     No Human
BROAD HISTORICAL Esophageal Adenocarcinoma Genome Sequencing Project   Esophageal Adenocarcinoma 100 Esophageal Adenocarcinoma T/N pairs by combination of whole exome (85) and whole genome (15) sequencing phs000598.v2.p2 Exome Sequencing of Esophageal Adenocarcinoma     Yes Human
BROAD HISTORICAL Exome Seqeuncing at Gleeson Lab/BI on Ciliopathy   Ciliopathy Exome sequencing for 500 ciliopathy patients Ciliopathies Exome Sequencing Initiative     No Human
BROAD HISTORICAL Finnish BMI Extremes   Obesity 47 individuals from tails of BMI distributions selected from an eastern Finnish population using exome sequencing         Human
BROAD HISTORICAL GEI Studies   Breast cancer           Human
BROAD HISTORICAL GEI Studies   Crohn's and colitis   NIDDK to initiate dbGAP     Yes Human
  HISTORICAL Genomics of familial Hodgkin lymphoma and multiple sclerosis   Hodgkin lymphoma, Multiple Sclerosis         Dropped Human
  HISTORICAL Germline risk variants in cancer             Dropped Human
BROAD HISTORICAL HDL-C Exome Sequencing   Extremly High High- Density Lipoprotein Cholesterol (HDL-C) 48 individuals with extremely high HDL-C and 48 individuals with low HDL-C using exome sequencing Genetics of High HDL Cholesterol     Yes Human
WASHU HISTORICAL Human Structural Variation   N/A Sequencing ~0.4X coverage in fosmid ends from up to 21 individuals and BAC ends for a few additional individuals PRJNA29893     No Human
BROAD HISTORICAL Impact of subclonal mutations in indolent B cell malignancies       phs000435.v1.p1 Whole Exome Sequencing of Chronic Lymphocytic Leukemia     No Human
BROAD HISTORICAL Lung Adenocarcinoma Tumor Exome Sequencing Project   Lung Adenocarcinoma 150 Lung Adenocarcinoma T/N by whole exome sequencing phs000488.v1.p1 Genomic Sequencing of Lung Adenocarcinoma"     Yes Human
BROAD HISTORICAL Medulloblastoma (Pediatric) Sequencing Project   Medulloblastoma (Pediatric) 100 Pediatric Medulloblastoma T/N pairs by whole exome sequencing (85) and whole genome sequencing (15) phs000504.v2.p2 Medulloblastoma exome sequence analysis     Yes Human
BROAD HISTORICAL Melanoma Genome Sequencing Project   Melanoma 150 Melanoma T/N pairs by combination of whole exome (135) and whole genome (15) sequencing phs000452.v1.p1 Melanoma Genome Sequencing Project     Yes Human
BROAD HISTORICAL Mendelian Disorders   Atrial Fibrillation, Dominant (ATFB2) Directed sequencing of all exons in mapped interval         Human
BROAD HISTORICAL Mendelian Disorders   Joubert Syndrome (JBTS1; JBTS2; JBTS4; JBTS5) Directed sequencing of all exons in mapped interval         Human
  HISTORICAL Mendelian Disorders   Lymphedema-Cholestasis Syndrome (LCS) Directed sequencing of all exons in mapped interval       Dropped Human
  HISTORICAL Mendelian Disorders   Paroxysmal Kinesigenic Dyskinesia (PKD) Directed sequencing of all exons in mapped interval       Dropped Human
BROAD HISTORICAL Neuroblastoma Tumor Exome Sequencing Project (Collaboration with TARGET)   Neuroblastoma 100 Neuroblastoma T/N pairs by exome sequencing phs000467.v7.p1 TARGET: Neuroblastoma (NBL)     Yes Human
  HISTORICAL Neurodevelopmental disorders             Dropped Human
  HISTORICAL Pilot metagenomic sequencing of human intestinal microbiome     Metagenomic sequencing       Dropped Human
  HISTORICAL Prostate Cancer   Prostate Cancer Whole exome       Dropped Human
BROAD HISTORICAL Prostate Cancer Genome Sequencing Project   Prostate Cancer 200 Primary "Lethal" Prostate T/N pairs by a combination of whole exome (150) and whole genome (50) sequencing phs000447.v1.p1 Prostate Cancer Genome Sequencing Project     Yes Human
BROAD HISTORICAL Resistance and major response to specific anti-cancer agents       phs000452.v1.p1 Melanoma Genome Sequencing Project     No Human
  HISTORICAL Schizophrenia             Dropped Human
BROAD HISTORICAL Schizophrenia Exome Sequencing   Schizophrenia 5800 samples and 6800 controls from Swedish schizophrenia case-conrolled cohort using exome sequencing pHS000473 Sweden-Schizophrenia Population-Based Case-Control Exome Sequencing     No Human
WASHU HISTORICAL Sequencing and Analysis of Treatment-related AML Genomes   t-AML 25 t-AML T/N pairs using whole genome sequencing phs000159     No Human
WASHU HISTORICAL Sequencing of cultivable microbes from human gut and vagina     Draft reference genomes of 200 bacteria and archea strains from human Submitted with HMP Bioproject PRJNA43021, PRJNA28331, each genome submitted separately to Nucleotide     Yes Human
  HISTORICAL Sequencing of cultivable microbes from human gut and vagina     Draft reference genomes of 200 bacteria and archea strains from human       Dropped Human
BAYLOR HISTORICAL Sequencing the Human Microbiome Pilot Metagenomic Sequencing of Human Intestinal Microbiome Human Microbiome Metagenomic WGS PRJNA43017     Yes Human
BAYLOR HISTORICAL Sequencing the Human Microbiome Pilot metagenomic sequencing of human intestinal microbiome Human Microbiome 16S PRJNA48489     Yes Human
BAYLOR HISTORICAL Sequencing the Human Microbiome Sequencing of cultivable microbes from human gut and vagina Human Microbiome Whole genome PRJNA28331     Yes Human
BROAD HISTORICAL T2D Exome Sequencing   Type 2 Diabetes (T2D) 1300 individuals with T2D with and 1300 controls using exome sequencing Go Type 2 Diabetes     Yes Human
WASHU HISTORICAL TCGA   Breast ductal carcinoma Whole Exome Sequencing PRJNA74949     Yes Human
WASHU HISTORICAL TCGA   Breast ductal carcinoma Whole Genome Sequencing PRJNA74949     Yes Human
WASHU HISTORICAL TCGA   Colon adenocarcinoma Whole Exome Sequencing PRJNA74949     Yes Human
WASHU HISTORICAL TCGA   Colon adenocarcinoma Whole Genome Sequencing PRJNA74949     Yes Human
WASHU HISTORICAL TCGA   Glioblastoma multiforme Transcriptome PRJNA74949     Yes Human
BROAD HISTORICAL TCGA   Glioblastoma multiforme Transcriptome phs000178.v8.p7 The Cancer Genome Atlas (TCGA)     No Human
BAYLOR HISTORICAL TCGA   Glioblastoma multiforme Transcriptome, RNA, cDNA PRJNA74949     Yes Human
BROAD HISTORICAL TCGA   Glioblastoma multiforme Whole Genome Sequencing phs000178.v8.p7 The Cancer Genome Atlas (TCGA)     No Human
BAYLOR HISTORICAL TCGA   Glioblastoma multiforme Whole exome PRJNA74949     Yes Human
BAYLOR HISTORICAL TCGA   Glioblastoma multiforme Whole genome PRJNA74949     Yes Human
BROAD HISTORICAL TCGA   Head and Neck squamous cell carcinoma Whole Exome Sequencing phs000178.v8.p7 The Cancer Genome Atlas (TCGA)     No Human
BROAD HISTORICAL TCGA   Head and Neck squamous cell carcinoma Whole Genome Sequencing phs000178.v8.p7 The Cancer Genome Atlas (TCGA)     No Human
BROAD HISTORICAL TCGA   Lung adenocarcinoma Whole Exome Sequencing phs000178.v8.p7 The Cancer Genome Atlas (TCGA)     No Human
BROAD HISTORICAL TCGA   Lung adenocarcinoma Whole Genome Sequencing phs000178.v8.p7 The Cancer Genome Atlas (TCGA)     No Human
BROAD HISTORICAL TCGA   Lung squamous cell carcinoma Whole Exome Sequencing phs000178.v8.p7 The Cancer Genome Atlas (TCGA)     No Human
BROAD HISTORICAL TCGA   Lung squamous cell carcinoma Whole Genome Sequencing phs000178.v8.p7 The Cancer Genome Atlas (TCGA)     No Human
WASHU HISTORICAL TCGA   Ovarian serous cystadenoma Transcriptome PRJNA74949     Yes Human
BROAD HISTORICAL TCGA   Ovarian serous cystadenoma Transcriptome phs000178.v8.p7 The Cancer Genome Atlas (TCGA)     No Human
BAYLOR HISTORICAL TCGA   Ovarian serous cystadenoma Transcriptome, RNA, cDNA PRJNA74949     Yes Human
WASHU HISTORICAL TCGA   Ovarian serous cystadenoma Whole Genome Sequencing PRJNA74949     Yes Human
BROAD HISTORICAL TCGA   Ovarian serous cystadenoma Whole Genome Sequencing phs000178.v8.p7 The Cancer Genome Atlas (TCGA)     No Human
BAYLOR HISTORICAL TCGA   Ovarian serous cystadenoma Whole exome PRJNA74949     Yes Human
BAYLOR HISTORICAL TCGA   Ovarian serous cystadenoma Whole genome PRJNA74949     Yes Human
WASHU HISTORICAL TCGA   Rectal adenocarcinoma Whole Exome Sequencing PRJNA74949     Yes Human
WASHU HISTORICAL TCGA   Rectal adenocarcinoma Whole Genome Sequencing PRJNA74949     Yes Human
BROAD HISTORICAL TCGA   Renal clear cell carcinoma Whole Exome Sequencing phs000178.v8.p7 The Cancer Genome Atlas (TCGA)     No Human
BROAD HISTORICAL TCGA   Renal clear cell carcinoma Whole Genome Sequencing phs000178.v8.p7 The Cancer Genome Atlas (TCGA)     No Human
BROAD HISTORICAL TCGA   Renal papillary carcinoma Whole Exome Sequencing phs000178.v8.p7 The Cancer Genome Atlas (TCGA)     No Human
BROAD HISTORICAL TCGA   Renal papillary carcinoma Whole Genome Sequencing phs000178.v8.p7 The Cancer Genome Atlas (TCGA)     No Human
BROAD HISTORICAL TCGA   Stomach adenocarcinoma Whole Exome Sequencing phs000178.v8.p7 The Cancer Genome Atlas (TCGA)     No Human
BROAD HISTORICAL TCGA   Stomach adenocarcinoma Whole Genome Sequencing phs000178.v8.p7 The Cancer Genome Atlas (TCGA)     No Human
WASHU HISTORICAL TCGA   Uterine corpus (endometrial carcinoma) Whole Exome Sequencing PRJNA74949     Yes Human
WASHU HISTORICAL TCGA   Uterine corpus (endometrial carcinoma) Whole Genome Sequencing PRJNA74949     Yes Human
  HISTORICAL The Virome in Healthy and Diseased Individuals     Transcriptome, RNA, cDNA   251 100% Dropped Human
WASHU HISTORICAL WUGSC TSP Proposal   Multiple 100 T/N pairs using whole genome sequencing over 12 months PRJNA176379, PRJNA157235, PRJNA74805, PRJNA41441, phs000159.v4.p2     Yes Human
  HISTORICAL X-linked disorders             Dropped Human
BROAD HISTORICAL 200 Mammals Phase 1 Aardvark (Orycteropus afer) Draft assembly PRJNA74587     Yes Non-Human
BROAD HISTORICAL 200 Mammals Phase 1 Big brown bat (Eptesicus fuscus) Draft assembly PRJNA72449     Yes Non-Human
BROAD HISTORICAL 200 Mammals Phase 1 California leaf-nosed bat (Macrotus californicus) Draft assembly       No Non-Human
BROAD HISTORICAL 200 Mammals Phase 1 Cape golden mole (Chrysochloris asiatica) Draft assembly PRJNA74591     Yes Non-Human
BROAD HISTORICAL 200 Mammals Phase 1 Chinchilla (Chinchilla laniger) Draft assembly PRJNA68239     Yes Non-Human
  HISTORICAL 200 Mammals Phase 1 Chinese hamster (Cricetulus griseus) Draft assembly       Dropped Non-Human
BROAD HISTORICAL 200 Mammals Phase 1 Crested porcupine (Hystrix cristata) Draft assembly       No Non-Human
BROAD HISTORICAL 200 Mammals Phase 1 Degu (Octodon degus) Draft assembly PRJNA74595     Yes Non-Human
BROAD HISTORICAL 200 Mammals Phase 1 Eastern grey kangaroo (Macropus giganteus) Draft assembly       No Non-Human
BROAD HISTORICAL 200 Mammals Phase 1 Euarchontoglires (2 primates and 9 non-primates), Laurasiatheria (4 Chiroptea and 6 non-Chiroptea), 4 Afrotheria, 2 Xenarthra, and 3 Marsupial De novo genome sequencing and assembly of 30 mammals in phase 1 Multiple     Yes Non-Human
BROAD HISTORICAL 200 Mammals Phase 1 Giant anteater (Myrmecophaga tridactyla) Draft assembly       No Non-Human
BROAD HISTORICAL 200 Mammals Phase 1 Golden-mantled howling monkey (Alouatta palliata) Draft assembly       No Non-Human
BROAD HISTORICAL 200 Mammals Phase 1 Greater horseshoe bat (Rhinolophus ferrumequinum) Draft assembly       No Non-Human
BROAD HISTORICAL 200 Mammals Phase 1 Hippopotamus (Hippopotamus amphibius) Draft assembly       No Non-Human
BROAD HISTORICAL 200 Mammals Phase 1 Honey Possum (Noolbenger) (Tarsipes rostratus) Draft assembly       No Non-Human
BROAD HISTORICAL 200 Mammals Phase 1 Koala (Phascolarctos cinereus) Draft assembly       No Non-Human
BROAD HISTORICAL 200 Mammals Phase 1 Lesser Egyptian jerboa (Jaculus jaculus) Draft assembly PRJNA72445     Yes Non-Human
BROAD HISTORICAL 200 Mammals Phase 1 Long-eared (Rufous) elephant shrew (Elephantulus rufescens) Draft assembly PRJNA74589     Yes Non-Human
BROAD HISTORICAL 200 Mammals Phase 1 Malayan tapir (Tapirus indicus) Draft assembly       No Non-Human
BROAD HISTORICAL 200 Mammals Phase 1 Mexican free-tailed bat (Tadarida brasiliensis) Draft assembly       No Non-Human
BROAD HISTORICAL 200 Mammals Phase 1 Naked mole rat (Heterocephalus glaber) Draft assembly PRJNA72441     Yes Non-Human
BROAD HISTORICAL 200 Mammals Phase 1 North American porcupine (Erethizon dorsatum) Draft assembly       No Non-Human
BROAD HISTORICAL 200 Mammals Phase 1 Ring-tailed lemur (Lemur catta) Draft assembly       No Non-Human
BROAD HISTORICAL 200 Mammals Phase 1 Screaming hairy armadillo (Chaetophractus vellerosus) Draft assembly       No Non-Human
BROAD HISTORICAL 200 Mammals Phase 1 Springhare (Pedetes capensis) Draft assembly       No Non-Human
BROAD HISTORICAL 200 Mammals Phase 1 Star nosed mole (Condylura cristata) Draft assembly PRJNA72447     Yes Non-Human
BROAD HISTORICAL 200 Mammals Phase 1 Syrian/Golden Hamster (Mesocricetus auratus) Draft assembly PRJNA77669     Yes Non-Human
BROAD HISTORICAL 200 Mammals Phase 1 Water chevrotain (Hyemoschus aquaticus) Draft assembly       No Non-Human
BROAD HISTORICAL 200 Mammals Phase 1 Weddell seal (Leptonychotes weddellii) Draft assembly PRJNA68235     Yes Non-Human
BROAD HISTORICAL 200 Mammals Phase 1 West Indian manatee (Trichechus manatus) Draft assembly PRJNA68243     Yes Non-Human
BROAD HISTORICAL 200 Mammals Phase 1 White rhinocerous (Ceratotherium simum) Draft assembly PRJNA74583     Yes Non-Human
BAYLOR HISTORICAL Bovine Genome   Cow (Bos taurus) Draft Assembly PRJNA12555      Yes Non-Human
BROAD HISTORICAL Canine Osteosarcoma and Lymphoma Tumor Resequencing - Pilot Project   Dog (Greyhound, Golden Retriever) (Canis familiaris), Osteosarcoma, Lymphoma 6 Osteosarcoma T/N pairs from Greyhounds and 6 Lymphoma T/N pairs from Golden Retrievers by whole genome sequencing PRJNA247491     Yes Non-Human
BROAD HISTORICAL Canine models of cancer       PRJNA247491     No Non-Human
AGENCOURT HISTORICAL Cat   Felis catus Low Coverage (~2X)       Yes Non-Human
  HISTORICAL Coelacanth/Lungfish RNA-Seq Project   Slender Lungfish or Spotted African Lungfish (Protopterus dolloi) RNA sequencing of 3 lungfish tissues - brain, testis, mixed organ (RNAseq libraries at 5Gb each) - to complement 1 tissue from coelacanth       Dropped Non-Human
BROAD HISTORICAL Defining the Transcriptome of Nine Vertebrate Genomes Using RNA-Seq   Dog, Rabbit, Guinea Pig, Elephant, Armadillo, Bushbaby, Opossum, Anole Lizard, Stickleback RNA sequence from 11 different tissues in 9 different species Multiple     Yes Non-Human
BROAD HISTORICAL Directed Mouse Mutant Re-Sequencing   Mouse (Mus musculus) Sequence ~20 mapped and spontaneous mutations and QTL a year and generate mouse exome array set PRJNA71859     Yes Non-Human
WASHU HISTORICAL Discovering biologically relevant Acute Myeloid Leukemia (AML) mutations by sequencing mouse Acute Promyelocytic Leukemia (APL) Genomes   Mouse (Mus musculus), AML 14 Mouse APL samples using whole genome sequencing PRJNA247993     No Non-Human
BROAD HISTORICAL Ecdysozoan Sequencing   Amphipod Crustacean (Jassa slatteryi) Draft Assembly       No Non-Human
BAYLOR HISTORICAL Ecdysozoan Sequencing   Geophilimorph Centipede (Strigamia maritima) Draft Assembly PRJNA20501     Yes Non-Human
WASHU HISTORICAL Ecdysozoan Sequencing   Horseshoe Crab (Limulus polyphemus) Draft Assembly PRJNA20489     No Non-Human
BROAD HISTORICAL Ecdysozoan Sequencing   Tardigrade (Hypsibius dujardini) Draft Assembly       No Non-Human
BAYLOR HISTORICAL Echinoderm Sequencing   Bat Star (Patiria miniata) Draft Assembly PRJNA49323      Yes Non-Human
BAYLOR HISTORICAL Echinoderm Sequencing   Sea Urchin (Strongylocentrotus purpuratus) Draft Assembly PRJNA10736     Yes Non-Human
  HISTORICAL Evolution of the Human Proteome Hagfish Eptatretus burgeri Draft Assembly       Dropped Non-Human
  HISTORICAL Evolution of the Human Proteome Skate Leucoraja erinacea Draft Assembly       Dropped Non-Human
BROAD HISTORICAL Evolution of the Human Proteome   African Coelacanth (Latimeria chalumnae) Draft Assembly PRJNA56111     Yes Non-Human
WASHU HISTORICAL Evolution of the Human Proteome   Painted Turtle (Chrysemys picta) Draft Assembly PRJNA78657, PRJNA210179     Yes Non-Human
BROAD HISTORICAL Evolution of the Human Proteome   Spotted Gar (Lepisosteus oculatus) Draft Assembly PRJNA68247     Yes Non-Human
JCVI HISTORICAL Freshwater Polyp Freshwater Polyp Hydra magnipapillata Draft Assembly       Yes Non-Human
AGENCOURT HISTORICAL Fruit Fly Fruit Fly Drosophila ananassae Draft Assembly       Yes Non-Human
AGENCOURT HISTORICAL Fruit Fly Fruit Fly Drosophila erecta Draft Assembly       Yes Non-Human
AGENCOURT HISTORICAL Fruit Fly Fruit Fly Drosophila grimshawi Draft Assembly       Yes Non-Human
AGENCOURT HISTORICAL Fruit Fly Fruit Fly Drosophila mojavensis Draft Assembly       Yes Non-Human
AGENCOURT HISTORICAL Fruit Fly Fruit Fly Drosophila virilis Draft Assembly       Yes Non-Human
JCVI HISTORICAL Fruit Fly Fruit Fly Drosophila willistoni Draft Assembly       Yes Non-Human
BAYLOR HISTORICAL Fruit Fly Genomes Drosophila Genetic Reference Panel Fruit fly (Drosophila melanogaster) Whole genome PRJNA36679     Yes Non-Human
WASHU HISTORICAL Fruit Fly Genomes   Fruit fly (Drosophila mauritiana) Feasibility Sequencing PRJNA20289     Yes Non-Human
BROAD HISTORICAL Fruit Fly Genomes   Fruit fly (Drosophila persimilis) Draft Assembly PRJNA12705     Yes Non-Human
BAYLOR HISTORICAL Fruit Fly Genomes   Fruit fly (Drosophila pseudoobscura) Draft Assembly PRJNA10626      Yes Non-Human
BROAD HISTORICAL Fruit Fly Genomes   Fruit fly (Drosophila sechellia) Draft Assembly PRJNA12711     Yes Non-Human
WASHU HISTORICAL Fruit Fly Genomes   Fruit fly (Drosophila simulans) Draft Assembly PRJNA12464, PRJNA29993, PRJNA18237, PRJNA17569, PRJNA17567, PRJNA17565, PRJNA17563, PRJNA17559, PRJNA17557     Yes Non-Human
WASHU HISTORICAL Fruit Fly Genomes   Fruit fly (Drosophila yakuba) Draft Assembly PRJNA29999     Yes Non-Human
  HISTORICAL Fungal Genome Initiative   Fungus (Agaricus bisporus) Draft Assembly       Dropped Non-Human
BROAD HISTORICAL Fungal Genome Initiative   Fungus (Aspergillus nidulans) Draft Assembly XM_656863     Yes Non-Human
BROAD HISTORICAL Fungal Genome Initiative   Fungus (Batrachochytrium dendrobatidis) Draft Assembly PRJNA13653     Yes Non-Human
BROAD HISTORICAL Fungal Genome Initiative   Fungus (Candida albicans(Strain WO-1)) Draft Assembly PRJNA16373     Yes Non-Human
BROAD HISTORICAL Fungal Genome Initiative   Fungus (Candida guilliermondii) Draft Assembly XM_001481862     Yes Non-Human
BROAD HISTORICAL Fungal Genome Initiative   Fungus (Candida lusitaniae) Draft Assembly PRJNA41079     Yes Non-Human
BROAD HISTORICAL Fungal Genome Initiative   Fungus (Candida tropicalis) Draft Assembly PRJNA13675     Yes Non-Human
BROAD HISTORICAL Fungal Genome Initiative   Fungus (Chaetomium globosum) Draft Assembly PRJNA16821     Yes Non-Human
BROAD HISTORICAL Fungal Genome Initiative   Fungus (Coccidioides immitis) Draft Assembly PRJNA12883     Yes Non-Human
BROAD HISTORICAL Fungal Genome Initiative   Fungus (Coprinus cinereus) Draft Assembly XM_002912152     Yes Non-Human
BROAD HISTORICAL Fungal Genome Initiative   Fungus (Cryptococcus neoformans Serotype A) Draft Assembly PRJNA177334     Yes Non-Human
BROAD HISTORICAL Fungal Genome Initiative   Fungus (Cryptococcus neoformans Serotype B) Draft Assembly PRJNA62089     Yes Non-Human
BROAD HISTORICAL Fungal Genome Initiative   Fungus (Histoplasma capsulatum) Draft Assembly PRJNA20041     Yes Non-Human
BROAD HISTORICAL Fungal Genome Initiative   Fungus (Lodderomyces elongisporus) Draft Assembly PRJNA19611     Yes Non-Human
BROAD HISTORICAL Fungal Genome Initiative   Fungus (Microsporum canis) Draft Assembly PRJNA30939     Yes Non-Human
BROAD HISTORICAL Fungal Genome Initiative   Fungus (Microsporum gypseum) Draft Assembly XM_003177621     Yes Non-Human
BROAD HISTORICAL Fungal Genome Initiative   Fungus (Pneumocystis carinii (human and mouse)) Draft Assembly PRJNA223519     Yes Non-Human
  HISTORICAL Fungal Genome Initiative   Fungus (Podospora anserina) Draft Assembly       Dropped Non-Human
BROAD HISTORICAL Fungal Genome Initiative   Fungus (Rhizopus oryzae) Draft Assembly PRJNA13066     yes Non-Human
BROAD HISTORICAL Fungal Genome Initiative   Fungus (Saccharomyces cerevisiae RM11-1a) Draft Assembly PRJNA13674     yes Non-Human
BROAD HISTORICAL Fungal Genome Initiative   Fungus (Schizosaccharomyces japonicus) Draft Assembly XM_002175797     yes Non-Human
BROAD HISTORICAL Fungal Genome Initiative   Fungus (Schizosaccharomyces octosporus) Draft Assembly PRJNA13639     yes Non-Human
BROAD HISTORICAL Fungal Genome Initiative   Fungus (Trichophyton equinum) Draft Assembly PRJNA20577     yes Non-Human
BROAD HISTORICAL Fungal Genome Initiative   Fungus (Trichophyton rubram) Draft Assembly PRJNA38221     yes Non-Human
BROAD HISTORICAL Fungal Genome Initiative   Fungus (Trichophyton tonsurans) Draft Assembly PRJNA38223     yes Non-Human
BROAD HISTORICAL Fungal Genome Initiative   Fungus (Uncinocarpus reesei) Draft Assembly PRJNA39807     yes Non-Human
BROAD HISTORICAL Fungal Genome Initiative   Fungus (Ustilago maydis) Draft Assembly PRJNA14007     yes Non-Human
BROAD HISTORICAL Fungal Genome Initiative   White Nose Fungus (Geomyces destructans) Draft Assembly PRJNA39257     yes Non-Human
WASHU HISTORICAL Fungal Genome Initiative   Yeast (Saccharomyces cerevisiae) 10 strains to full draft, 2-fold coverage up to 25 strains coverage PRJNA62061     Yes Non-Human
WASHU HISTORICAL Fungal Genome Initiative   Yeast (Saccharomyces kluyveri) Draft Assembly PRJNA1445, PRJNA209023     Yes Non-Human
BROAD HISTORICAL Genome Sequencing of Black Yeasts   Black Yeast Draft assemblies and annotations for 14 important species of black yeasts with RNA-seq for 5 of the species PRJNA175043     Yes Non-Human
  HISTORICAL Genome and other Sequence Information from Primate Models of HIV Infection    Macaque, Rhesus (Chinese population) (Macaca mulatta) Draft Assembly       Dropped Non-Human
  HISTORICAL Genome and other Sequence Information from Primate Models of HIV Infection    Rhesus Macaque (Macaca mulatta) RNA Sequencing       Dropped Non-Human
JCVI HISTORICAL Louse, Body Louse, Body Pediculus humanus Draft Assembly       Yes Non-Human
JCVI HISTORICAL Mosquito   Anopheles gambiae, S strain Draft Assembly       Yes Non-Human
BROAD HISTORICAL Mouse Genomes   House Mouse (Mus musculus) 5 Mb targeted sequencing per line, eventually several hundred lines       Yes Non-Human
BROAD HISTORICAL Mouse Genomes   House Mouse (Mus musculus) Exome and targeted resequencing of mouse mutants PRJNA247497     Yes Non-Human
BROAD HISTORICAL Mouse Genomes   House Mouse (Mus musculus) Finished sequence PRJNA13183     Yes Non-Human
BAYLOR HISTORICAL Mouse Genomes   House Mouse (Mus musculus) Finished sequence PRJNA13183     Yes Non-Human
WASHU HISTORICAL Mouse Genomes   House Mouse (Mus musculus) Finished sequence       No Non-Human
BAYLOR HISTORICAL Multiple Mammalian Genomes for Comparative Genome Annotation Increased Coverage of 2X Mammals Nine-banded Armadillo (Dasypus novemcinctus) Draft Assembly PRJNA12594      Yes Non-Human
BAYLOR HISTORICAL Multiple Mammalian Genomes for Comparative Genome Annotation Top-up of Remaining 2X Mammals Dolphin (Tursiops truncatus) Draft Assembly PRJNA20367     Yes Non-Human
BROAD HISTORICAL Multiple Mammalian Genomes for Comparative Genome Annotation   African Savannah Elephant (Loxodonta africana africana) Draft Assembly PRJNA12569     Yes Non-Human
BROAD HISTORICAL Multiple Mammalian Genomes for Comparative Genome Annotation   African Savannah Elephant (Loxodonta africana africana) Low coverage (2X) PRJNA12569     Yes Non-Human
  HISTORICAL Multiple Mammalian Genomes for Comparative Genome Annotation   African Savannah Elephant (Loxodonta africana africana) Transcriptome       Dropped Non-Human
WASHU HISTORICAL Multiple Mammalian Genomes for Comparative Genome Annotation   Alpaca (Vicugna pacos) Draft Assembly PRJNA30567     Yes Non-Human
WASHU HISTORICAL Multiple Mammalian Genomes for Comparative Genome Annotation   Alpaca (Vicugna pacos) Low coverage (2X) PRJNA30567     Yes Non-Human
BROAD HISTORICAL Multiple Mammalian Genomes for Comparative Genome Annotation   Bushbaby (Galago) (Otolemur garnetti) Low coverage (2X) PRJNA16955     Yes Non-Human
WASHU HISTORICAL Multiple Mammalian Genomes for Comparative Genome Annotation   Cat (Felis catus) Low coverage (2X) PRJNA16726, PRJNA175699     Yes Non-Human
BROAD HISTORICAL Multiple Mammalian Genomes for Comparative Genome Annotation   Common European Shrew (Sorex araneus) Draft Assembly PRJNA13689     Yes Non-Human
BROAD HISTORICAL Multiple Mammalian Genomes for Comparative Genome Annotation   Common European Shrew (Sorex araneus) Low coverage (2X) PRJNA13689     Yes Non-Human
BAYLOR HISTORICAL Multiple Mammalian Genomes for Comparative Genome Annotation   Dolphin (Tursiops truncatus) Low coverage (2X) PRJNA20367     Yes Non-Human
WASHU HISTORICAL Multiple Mammalian Genomes for Comparative Genome Annotation   Domestic Cat (Felis catus) Draft Assembly PRJNA16726, PRJNA175699     Yes Non-Human
  HISTORICAL Multiple Mammalian Genomes for Comparative Genome Annotation   Elephant Shrew (Elephantulus sp.  ) Low coverage (2X)       Dropped Non-Human
BROAD HISTORICAL Multiple Mammalian Genomes for Comparative Genome Annotation   European Hedgehog (Erinaceus europaeus) Draft Assembly PRJNA74585     Yes Non-Human
BROAD HISTORICAL Multiple Mammalian Genomes for Comparative Genome Annotation   European Hedgehog (Erinaceus europaeus) Low coverage (2X) PRJNA74585     Yes Non-Human
WASHU HISTORICAL Multiple Mammalian Genomes for Comparative Genome Annotation   Flying Lemur (Dermoptera sp.) Draft Assembly PRJNA20511     No Non-Human
  HISTORICAL Multiple Mammalian Genomes for Comparative Genome Annotation   Flying Lemur (Dermoptera sp.) Low coverage (2X)       Dropped Non-Human
BROAD HISTORICAL Multiple Mammalian Genomes for Comparative Genome Annotation   Guinea Pig (Cavia porcellus) Draft Assembly PRJNA12583     Yes Non-Human
BROAD HISTORICAL Multiple Mammalian Genomes for Comparative Genome Annotation   Guinea Pig (Cavia porcellus) Low coverage (2X) PRJNA12583     Yes Non-Human
BROAD HISTORICAL Multiple Mammalian Genomes for Comparative Genome Annotation   Guinea Pig (Cavia porcellus) Transcriptome       No Non-Human
BROAD HISTORICAL Multiple Mammalian Genomes for Comparative Genome Annotation   Horse (Equus caballas) Draft Assembly PRJNA18661     Yes Non-Human
  HISTORICAL Multiple Mammalian Genomes for Comparative Genome Annotation   Horse (Equus caballas) Low coverage (2X)       Dropped Non-Human
BAYLOR HISTORICAL Multiple Mammalian Genomes for Comparative Genome Annotation   Hyrax (Procavia capensis) Low coverage (2X) PRJNA13972     Yes Non-Human
  HISTORICAL Multiple Mammalian Genomes for Comparative Genome Annotation   Kangaroo Rat (Dipodomys sp.) Draft Assembly       Dropped Non-Human
  HISTORICAL Multiple Mammalian Genomes for Comparative Genome Annotation   Large Flying Fox (Megabat) (Pteropus vampyrus) Draft Assembly       Dropped Non-Human
BAYLOR HISTORICAL Multiple Mammalian Genomes for Comparative Genome Annotation   Large Flying Fox (Megabat) (Pteropus vampyrus) Low coverage (2X) PRJNA20325      Yes Non-Human
BROAD HISTORICAL Multiple Mammalian Genomes for Comparative Genome Annotation   Little Brown Bat (Microbat) (Myotis lucifugus) Draft Assembly PRJNA16951     Yes Non-Human
BROAD HISTORICAL Multiple Mammalian Genomes for Comparative Genome Annotation   Little Brown Bat (Microbat) (Myotis lucifugus) Low coverage (2X) PRJNA16951     Yes Non-Human
  HISTORICAL Multiple Mammalian Genomes for Comparative Genome Annotation   Llama (Llama sp.) Low coverage (2X)       Dropped Non-Human
  HISTORICAL Multiple Mammalian Genomes for Comparative Genome Annotation   Mole (Cryptomys sp.) Low coverage (2X)       Dropped Non-Human
BROAD HISTORICAL Multiple Mammalian Genomes for Comparative Genome Annotation   Mouse Lemur (Microcebus murinus) Low coverage (2X) PRJNA19967     Yes Non-Human
BROAD HISTORICAL Multiple Mammalian Genomes for Comparative Genome Annotation   Nine-banded Armadillo (Dasypus novemcinctus) Low coverage (2X) PRJNA12594     Yes Non-Human
BROAD HISTORICAL Multiple Mammalian Genomes for Comparative Genome Annotation   Nine-banded Armadillo (Dasypus novemcinctus) Transcriptome PRJNA163137     Yes Non-Human
BAYLOR HISTORICAL Multiple Mammalian Genomes for Comparative Genome Annotation   Ord's kangaroo rat (Dipodomys ordii) Low coverage (2X) PRJNA20385     Yes Non-Human
WASHU HISTORICAL Multiple Mammalian Genomes for Comparative Genome Annotation   Pangolin (Manis pentadactyla) Draft Assembly PRJNA20331     No Non-Human
  HISTORICAL Multiple Mammalian Genomes for Comparative Genome Annotation   Pangolin (Manis pentadactyla) Low coverage (2X)       Dropped Non-Human
BROAD HISTORICAL Multiple Mammalian Genomes for Comparative Genome Annotation   Pika (Ochotona princeps) Draft Assembly PRJNA74593     Yes Non-Human
BROAD HISTORICAL Multiple Mammalian Genomes for Comparative Genome Annotation   Pika (Ochotona princeps) Low coverage (2X) PRJNA19235     Yes Non-Human
BROAD HISTORICAL Multiple Mammalian Genomes for Comparative Genome Annotation   Rabbit (Oryctolagus cuniculus) Draft Assembly PRJNA12819     Yes Non-Human
BROAD HISTORICAL Multiple Mammalian Genomes for Comparative Genome Annotation   Rabbit (Oryctolagus cuniculus) Low coverage (2X) PRJNA12819     Yes Non-Human
BROAD HISTORICAL Multiple Mammalian Genomes for Comparative Genome Annotation   Rabbit (Oryctolagus cuniculus) Transcriptome PRJNA78323     Yes Non-Human
WASHU HISTORICAL Multiple Mammalian Genomes for Comparative Genome Annotation   Sloth (Choloepus hoffmanni) Draft Assembly PRJNA30809     No Non-Human
WASHU HISTORICAL Multiple Mammalian Genomes for Comparative Genome Annotation   Sloth (Choloepus hoffmanni) Low coverage (2X) PRJNA30809     Yes Non-Human
BROAD HISTORICAL Multiple Mammalian Genomes for Comparative Genome Annotation   Squirrel (Spermophilis tridecemlineatus) Draft Assembly PRJNA61725     Yes Non-Human
BROAD HISTORICAL Multiple Mammalian Genomes for Comparative Genome Annotation   Squirrel (Spermophilis tridecemlineatus) Low coverage (2X) PRJNA13937     Yes Non-Human
BROAD HISTORICAL Multiple Mammalian Genomes for Comparative Genome Annotation   Tarsier (Tarsier syrichta) Low coverage (2X) PRJNA20339     Yes Non-Human
BROAD HISTORICAL Multiple Mammalian Genomes for Comparative Genome Annotation   Tenrec (Hedgehog) (Echinops telfairi) Draft Assembly PRJNA12590     Yes Non-Human
BROAD HISTORICAL Multiple Mammalian Genomes for Comparative Genome Annotation   Tenrec (Lesser Hedgehog) (Echinops telfairi) Low coverage (2X) PRJNA12590     Yes Non-Human
BGI HISTORICAL Multiple Mammalian Genomes for Comparative Genome Annotation   Tree Shrew (Tupaia belangeri) Draft Assembly PRJNA20273     No Non-Human
WASHU HISTORICAL Multiple Mammalian Genomes for Comparative Genome Annotation   Tree Shrew (Tupaia belangeri) Low coverage (2X) PRJNA13971     Yes Non-Human
WASHU HISTORICAL Multiple Mammalian Y Chromosomes   Cow (Bos taurus) Genome Refinement PRJNA20275     Yes Non-Human
BAYLOR HISTORICAL Multiple Mammalian Y Chromosomes   Cow (Bos taurus) Genome Refinement PRJNA20275     Yes Non-Human
WASHU HISTORICAL Multiple Mammalian Y Chromosomes   Laboratory Opposum (Monodelphis domestica) Genome Refinement PRJNA74623     Yes Non-Human
WASHU HISTORICAL Multiple Mammalian Y Chromosomes   Marmoset (Callithrix jacchus) Genome Refinement PRJNA20401, PRJNA46205     Yes Non-Human
BAYLOR HISTORICAL Multiple Mammalian Y Chromosomes   Rat (Rattus norvegicus) Genome Refinement PRJNA222509     No Non-Human
WASHU HISTORICAL Multiple Mammalian Y Chromosomes   Rat (Rattus norvegicus) Genome Refinement PRJNA10629     Yes Non-Human
BAYLOR HISTORICAL Multiple Mammalian Y Chromosomes   Rhesus Macaque (Macaca mulatta) Genome Refinement PRJNA253406     No Non-Human
WASHU HISTORICAL Multiple Mammalian Y Chromosomes   Rhesus Macaque (Macaca mulatta) Genome Refinement PRJNA16397, PRJNA12537     Yes Non-Human
WASHU HISTORICAL Nematode Sequencing   Entomopathogenic Nematode (Heterorhabditis bacteriophora) Draft Assembly PRJNA13977     Yes Non-Human
WASHU HISTORICAL Nematode Sequencing   Hookworm (Ancylostoma caninum) Draft Assembly PRJNA72585, PRJNA20441     No Non-Human
WASHU HISTORICAL Nematode Sequencing   Hookworm (Necator americanus) Draft Assembly PRJNA72135, PRJNA20443     No Non-Human
WASHU HISTORICAL Nematode Sequencing   Nematode (Pristionchus pacificus) Draft Assembly PRJNA12644     Yes Non-Human
WASHU HISTORICAL Nematode Sequencing   Strongylid nematode (Ancylostoma duodenale replaces Nippostrongylus brasiliensis) Draft Assembly PRJNA72581, PRJNA12858     No Non-Human
WASHU HISTORICAL Nematode Sequencing   Strongylid nematode (Teladorsagia circumcincta) Draft Assembly PRJNA72569     No Non-Human
WASHU HISTORICAL Nematode Sequencing   Strongylid nematode (Trichostrongylus colubriformis replaces Trichostrongylus vitrinus) Draft Assembly PRJNA74537     No Non-Human
BROAD HISTORICAL Origins of Multicellularity   Amastigomonas sp. Draft Assembly PRJNA20469     Yes Non-Human
BROAD HISTORICAL Origins of Multicellularity   Fungus (Spizellomyces punctatus) Low coverage (2X)       No Non-Human
BROAD HISTORICAL Origins of Multicellularity   Protist (Amoebidium parasiticum) Low coverage (2X) PRJNA189476   100% Yes Non-Human
BROAD HISTORICAL Origins of Multicellularity   Protist (Capsaspora owczarzaki) Draft Assembly PRJNA20341   100% Yes Non-Human
BROAD HISTORICAL Origins of Multicellularity   Protist (Ministeria vibrans) Draft Assembly PRJNA39421   100% No Non-Human
  HISTORICAL Origins of Multicellularity   Protist (Nuclearia simplex) Draft Assembly PRJNA20493   100% Dropped Non-Human
BROAD HISTORICAL Origins of Multicellularity   Protist (Salpingoeca rosetta) Draft Assembly PRJNA37927   100% Yes Non-Human
BROAD HISTORICAL Origins of Multicellularity   Protist (Schaeroforma arctica) Low coverage (2X) PRJNA20463   100% Yes Non-Human
  HISTORICAL Origins of Multicellularity   Protist (Stephanoeca or Acanthocoepis sp.) Low coverage (2X)       Dropped Non-Human
BROAD HISTORICAL Origins of Multicellularity   Protist (Thecamonas trahens) Draft Assembly PRJNA20469   100% Yes Non-Human
BROAD HISTORICAL Origins of Multicellularity   Yeast (Allomyces macrogynus) Draft Assembly PRJNA20563   100% Yes Non-Human
BROAD HISTORICAL Origins of Multicellularity   Yeast (Mortierella verticulata) Low coverage (2X) PRJNA20603   100% Yes Non-Human
BROAD HISTORICAL Other Model Chordate & Vertebrate Genomes   Anole Lizard (Anolis carolinensis) Draft Assembly PRJNA18787     Yes Non-Human
BROAD HISTORICAL Other Model Chordate & Vertebrate Genomes   Anole Lizard (Anolis carolinensis) Transcriptome PRJNA78917     Yes Non-Human
WASHU HISTORICAL Other Model Chordate & Vertebrate Genomes   Chicken (Gallus gallus) Draft Assembly PRJNA10808     Yes Non-Human
WASHU HISTORICAL Other Model Chordate & Vertebrate Genomes   Chicken (Gallus gallus) Genome Refinement PRJNA13342     Yes Non-Human
BROAD HISTORICAL Other Model Chordate & Vertebrate Genomes   Dog (Canis familiaris) Draft Assembly PRJNA13179     Yes Non-Human
BROAD HISTORICAL Other Model Chordate & Vertebrate Genomes   Dog (Canis familiaris) Genome Refinement PRJNA13179     Yes Non-Human
BROAD HISTORICAL Other Model Chordate & Vertebrate Genomes   Dog (Canis familiaris) Transcriptome PRJNA78827     Yes Non-Human
WASHU HISTORICAL Other Model Chordate & Vertebrate Genomes   Elephant Shark (Callorhynchus milii) Draft Assembly PRJNA18361     Yes Non-Human
BROAD HISTORICAL Other Model Chordate & Vertebrate Genomes   Ferret (Mustela putorius furo) Draft Assembly PRJNA78317     Yes Non-Human
BROAD HISTORICAL Other Model Chordate & Vertebrate Genomes   Gray Short-Tailed Opposum (Monodelphis domestica) Draft Assembly PRJNA12561     Yes Non-Human
BROAD HISTORICAL Other Model Chordate & Vertebrate Genomes   Gray Short-Tailed Opposum (Monodelphis domestica) Transcriptome PRJNA164819     Yes Non-Human
WASHU HISTORICAL Other Model Chordate & Vertebrate Genomes   Platypus (Ornithorhynchus anatinus) Draft Assembly PRJNA12885, PRJNA19039     Yes Non-Human
BROAD HISTORICAL Other Model Chordate & Vertebrate Genomes   Prarie Vole (Microtus ochrogaster) Draft assembly, SNP resource, and low-coverage of related species PRJNA72443     Yes Non-Human
WASHU HISTORICAL Other Model Chordate & Vertebrate Genomes   Sea Lamprey (Petromyzon marinus) Draft Assembly PRJNA12880     Yes Non-Human
BROAD HISTORICAL Other Model Chordate & Vertebrate Genomes   Threespine Stickleback (Gasterosteus aculeatus) Draft Assembly PRJNA13579     Yes Non-Human
BROAD HISTORICAL Other Model Chordate & Vertebrate Genomes   Threespine Stickleback (Gasterosteus aculeatus) Transcriptome PRJNA163141     Yes Non-Human
BROAD HISTORICAL Other Model Chordate & Vertebrate Genomes   Tilapia Cichlid (Astatotilapia burtoni) Draft Assembly PRJNA60363     Yes Non-Human
BROAD HISTORICAL Other Model Chordate & Vertebrate Genomes   Tilapia Cichlid (Metriaclima zebra) Draft Assembly PRJNA60369     Yes Non-Human
BROAD HISTORICAL Other Model Chordate & Vertebrate Genomes   Tilapia Cichlid (Oreochromis niloticus) Draft Assembly PRJNA59571     Yes Non-Human
BROAD HISTORICAL Other Model Chordate & Vertebrate Genomes   Tilapia Cichlid (Paralibidichromis chilotes) Draft Assembly PRJNA60367     Yes Non-Human
WASHU HISTORICAL Other Model Chordate & Vertebrate Genomes   Zebra finch (Taeniopygia guttata) Draft Assembly PRJNA17289, PRJNA32405     Yes Non-Human
WASHU HISTORICAL Other Model Chordate & Vertebrate Genomes   Zebra finch (Taeniopygia guttata) Physical Map       Yes Non-Human
BAYLOR HISTORICAL Other Model Invertebrate Genomes   Acorn Worm (Saccoglossus kowalesvskii) Draft Assembly PRJNA12887     Yes Non-Human
  HISTORICAL Other Model Invertebrate Genomes   Choanoflagellate (Monosiga ovata) Draft Assembly PRJNA12871     Dropped Non-Human
WASHU HISTORICAL Other Model Invertebrate Genomes   Freshwater Snail (Biomphalaria glabrata) Draft Assembly PRJNA12879     Yes Non-Human
BAYLOR HISTORICAL Other Model Invertebrate Genomes   Honey Bee (Apis mellifera) Draft Assembly PRJNA10625     Yes Non-Human
BAYLOR HISTORICAL Other Model Invertebrate Genomes   Honey Bee (Apis mellifera) Genome Refinement  PRJNA10625     Yes Non-Human
BAYLOR HISTORICAL Other Model Invertebrate Genomes   Parasitoid Wasp (Nasonia giraulti) Draft Assembly PRJNA20223     Yes Non-Human
BAYLOR HISTORICAL Other Model Invertebrate Genomes   Parasitoid Wasp (Nasonia longicornis) Draft Assembly PRJNA20225     Yes Non-Human
BAYLOR HISTORICAL Other Model Invertebrate Genomes   Parasitoid Wasp (Nasonia vitripennis) Draft Assembly PRJNA13660     Yes Non-Human
BAYLOR HISTORICAL Other Model Invertebrate Genomes   Pea Aphid (Acyrtohosiphon pisum) Draft Assembly PRJNA13657     Yes Non-Human
  HISTORICAL Other Model Invertebrate Genomes   Placazoan (Trichoplax adhaerens) Draft Assembly       Dropped, done elsewhere Non-Human
WASHU HISTORICAL Other Model Invertebrate Genomes   Planarian (Schmidtea mediterranea) Draft Assembly PRJNA12585     Yes Non-Human
BROAD HISTORICAL Other Model Invertebrate Genomes   Pufferfish (Tetraodon nigroviridis) Draft Assembly PRJNA20435     Yes Non-Human
BAYLOR HISTORICAL Other Model Invertebrate Genomes   Red Flour Beetle (Tribolium castaneum) Draft Assembly PRJNA12540     Yes Non-Human
BROAD HISTORICAL Other Model Invertebrate Genomes   Sea Squirt (Ciona savignyi) Draft Assembly PRJNA1435     Yes Non-Human
BROAD HISTORICAL Other Model Invertebrate Genomes   Sea slug (Aplysia californica) Draft Assembly PRJNA13635     Yes Non-Human
BROAD HISTORICAL Pathogens and Vectors   Black Yeast (Capronia coronata / Exophiala) Draft Assembly PRJNA164585     Yes Non-Human
BROAD HISTORICAL Pathogens and Vectors   Black Yeast (Capronia epimyces) Draft Assembly PRJNA164587     Yes Non-Human
BROAD HISTORICAL Pathogens and Vectors   Black Yeast (Cladophialophora bantiana) Draft Assembly PRJNA233316     Yes Non-Human
BROAD HISTORICAL Pathogens and Vectors   Black Yeast (Cladophialophora carrionii) Draft Assembly PRJNA185784     Yes Non-Human
BROAD HISTORICAL Pathogens and Vectors   Black Yeast (Cladophialophora psammophila) Draft Assembly  PRJNA164589     Yes Non-Human
BROAD HISTORICAL Pathogens and Vectors   Black Yeast (Cladophialophora yegresii) Draft Assembly PRJNA164591     Yes Non-Human
BROAD HISTORICAL Pathogens and Vectors   Black Yeast (Coniosporium apollinis) Draft Assembly       No Non-Human
BROAD HISTORICAL Pathogens and Vectors   Black Yeast (Coniosporium epidermidis) Draft Assembly       No Non-Human
BROAD HISTORICAL Pathogens and Vectors   Black Yeast (Exophiala aquamarina) Draft Assembly PRJNA164593     Yes Non-Human
BROAD HISTORICAL Pathogens and Vectors   Black Yeast (Exophiala dermatitidis) Draft Assembly       No Non-Human
BROAD HISTORICAL Pathogens and Vectors   Black Yeast (Exophiala spinifera) Draft Assembly       No Non-Human
BROAD HISTORICAL Pathogens and Vectors   Black Yeast (Fonsecaea pedrosoi) Draft Assembly PRJNA233314     Yes Non-Human
BROAD HISTORICAL Pathogens and Vectors   Black Yeast (Ochroconis gallopava) Draft Assembly       No Non-Human
BROAD HISTORICAL Pathogens and Vectors   Black Yeast (Phialophora europaea) Draft Assembly       No Non-Human
BROAD HISTORICAL Pathogens and Vectors   Black Yeast (Rhinocladiella mackenziei) Draft Assembly PRJNA233315     Yes Non-Human
WASHU HISTORICAL Pathogens and Vectors   Mosquito (Anopheles gambiae (M strain)) Draft Assembly PRJNA20295     Yes Non-Human
BROAD HISTORICAL Pathogens and Vectors   Mosquito (Anopheles species) High quality assembly for 13 species; 200,000 EST of each species PRJNA67129   100% Yes Non-Human
BROAD HISTORICAL Pathogens and Vectors   Protist (Plasmodium vivax) 8x coverage of 6 species/strains; 40k ESTs PRJNA67239/PRJNA67237/PRJNA67065/PRJNA65119   100% Yes Non-Human
BROAD HISTORICAL Pathogens and Vectors   Protist (Plasmodiums and other related species) Draft sequence and ESTs of multiple isolates of P. falciparum, P. vivax, and related species for comparative and model system studies PRJNA72437   100% Yes Non-Human
BAYLOR HISTORICAL Pathogens and Vectors   Sandfly (Lutzomyia longipalpis) BAC library construction; BAC-end sequencing PRJNA20279     Yes Non-Human
  HISTORICAL Pathogens and Vectors   Sandfly (Lutzomyia longipalpis) BAC library construction; BAC-end sequencing       Dropped Non-Human
WASHU HISTORICAL Pathogens and Vectors   Sandfly (Phlebotomus papatasi) BAC library construction; BAC-end sequencing PRJNA20293     Yes Non-Human
WASHU HISTORICAL Pathogens and Vectors   Triatomid Bug (Rhodnius prolixus) Draft Assembly PRJNA13648     Yes Non-Human
WASHU HISTORICAL Pathogens and Vectors   Trichinella (Trichinella spiralis) Draft Assembly PRJNA12647, PRJNA12603, PRJNA66457     Yes Non-Human
WASHU HISTORICAL Pathogens and Vectors   Trichinella (Trichinella spiralis) Genome Refinement PRJNA12647, PRJNA12603, PRJNA66457     Yes Non-Human
  HISTORICAL Pathogens and Vectors   Tsetse Fly (Glossina species) Draft genome assembly and transcriptome sequencing of five Glossina genomes and two comparative genomes; low coverage genome sequencing of ~12  field populations.       Dropped Non-Human
BAYLOR HISTORICAL Peromyscus   Deer Mouse (Peromyscus californicus) Low coverage (2X) PRJNA53595     Yes Non-Human
BAYLOR HISTORICAL Peromyscus   Deer Mouse (Peromyscus maniculatus) Draft Assembly PRJNA53563     Yes Non-Human
BAYLOR HISTORICAL Peromyscus   Deer Mouse (Peromyscus polionotus) Low coverage (2X) PRJNA53593     Yes Non-Human
BAYLOR HISTORICAL Peromyscus   White-footed mouse (Peromyscus leucopus) Low coverage (2X) PRJNA53591      Yes Non-Human
BROAD HISTORICAL Population genomic analysis of the human pathogenic fungus Cyptococcus neoformans   Cyptococcus (multiple variety) (Cyptococcus gatti) Draft assembly  PRJNA174567     Yes Non-Human
BROAD HISTORICAL Population genomic analysis of the human pathogenic fungus Cyptococcus neoformans   Cyptococcus (multiple variety) (Cyptococcus neoformans (various species) De novo genome assembly of 113 C. neoformans var. grubii, 15 var. neoformans, 14 hybrids, 15 C. gatti, and 18 other Tremellales species; resequencing of 159 for var. grubii  PRJNA174567     Yes Non-Human
BROAD HISTORICAL Population genomic analysis of the human pathogenic fungus Cyptococcus neoformans   Cyptococcus (multiple variety) (Cyptococcus neoformans var. grubii) Draft assembly  PRJNA174567     Yes Non-Human
BROAD HISTORICAL Population genomic analysis of the human pathogenic fungus Cyptococcus neoformans   Cyptococcus (multiple variety) (Cyptococcus neoformans var. grubii) Resequencing  PRJNA174567     Yes Non-Human
BROAD HISTORICAL Population genomic analysis of the human pathogenic fungus Cyptococcus neoformans   Cyptococcus (multiple variety) (Cyptococcus neoformans var. neoformans) Draft assembly  PRJNA174567     Yes Non-Human
BROAD HISTORICAL Population genomic analysis of the human pathogenic fungus Cyptococcus neoformans   Cyptococcus (multiple variety) (Hybrids) Draft assembly  PRJNA174567     Yes Non-Human
BROAD HISTORICAL Population genomic analysis of the human pathogenic fungus Cyptococcus neoformans   Cyptococcus (multiple variety) (Other Tremellales species) Draft assembly  PRJNA174567     Yes Non-Human
  HISTORICAL Primate Genomes   Bonobo (Pan paniscus) Fosmid-end sequencing       Dropped Non-Human
BROAD HISTORICAL Primate Genomes   Bushbaby (Otolemur garnetti) Draft Assembly PRJNA16955     Yes Non-Human
BROAD HISTORICAL Primate Genomes   Bushbaby/Galago (Otolemur garnetti) Transcriptome PRJNA163171     Yes Non-Human
BROAD HISTORICAL Primate Genomes   Chimpanzee (Pan troglodytes) Draft Assembly PRJNA13184     Yes Non-Human
WASHU HISTORICAL Primate Genomes   Chimpanzee (Pan troglodytes) Draft Assembly PRJNA10627     Yes Non-Human
WASHU HISTORICAL Primate Genomes   Chimpanzee (Pan troglodytes) Genome Refinement PRJNA13184     Yes Non-Human
WASHU HISTORICAL Primate Genomes   Cynomolgus Macaque (Macaca fascicularis) Draft Assembly PRJNA20409     Yes Non-Human
WASHU HISTORICAL Primate Genomes   Gibbon (Nomascus leucogenys) BAC-end sequencing PRJNA13975, PRJNA62133     Yes Non-Human
BAYLOR HISTORICAL Primate Genomes   Gibbon (Nomascus leucogenys) Draft Assembly PRJNA13975      Yes Non-Human
WASHU HISTORICAL Primate Genomes   Gibbon (Nomascus leucogenys) Targeted BAC finishing       Yes Non-Human
WASHU HISTORICAL Primate Genomes   Marmoset (Callithrix jacchus) Draft Assembly PRJNA20401, PRJNA46205     Yes Non-Human
BAYLOR HISTORICAL Primate Genomes   Marmoset (Callithrix jacchus) Draft Assembly PRJNA20401     Yes Non-Human
WASHU HISTORICAL Primate Genomes   Marmoset (Callithrix jacchus) Targeted BAC finishing       Yes Non-Human
BAYLOR HISTORICAL Primate Genomes   Marmoset (Callithrix jacchus) Targeted BAC finishing PRJNA20401     Yes Non-Human
BAYLOR HISTORICAL Primate Genomes   Olive Baboon (Papio anubis) Draft Assembly PRJNA54005      Yes Non-Human
BAYLOR HISTORICAL Primate Genomes   Orangutan (Pongo abelii) Draft Assembly PRJNA20869     Yes Non-Human
  HISTORICAL Primate Genomes   Orangutan (Pongo abelii) Targeted BAC finishing       Dropped Non-Human
WASHU HISTORICAL Primate Genomes   Orangutan (Pongo pygmaeus) Draft Assembly PRJNA74653     Yes Non-Human
WASHU HISTORICAL Primate Genomes   Orangutan (Pongo pygmaeus) Targeted BAC finishing       Yes Non-Human
BAYLOR HISTORICAL Primate Genomes   Rhesus Macaque (Macaca mulatta) Draft Assembly PRJNA12537      Yes Non-Human
WASHU HISTORICAL Primate Genomes   Rhesus Macaque (Macaca mulatta) Draft Assembly PRJNA16397, PRJNA12537     Yes Non-Human
WASHU HISTORICAL Primate Genomes   Rhesus Macaque (Macaca mulatta) Targeted BAC finishing       Yes Non-Human
BAYLOR HISTORICAL Primate Genomes   Rhesus Macaque (Macaca mulatta) Targeted BAC finishing PRJNA12537      Yes Non-Human
BROAD HISTORICAL Primate Genomes   Squirrel Monkey (Saimiri sp.) Draft Assembly PRJNA67945     Yes Non-Human
WASHU HISTORICAL Primate Genomes   Tarsier (Tarsier syrichta) Draft Assembly PRJNA20339     Yes Non-Human
BAYLOR HISTORICAL Protist Systems   Amoeba (Acanthamoeba castellanii) Draft Assembly PRJNA20303     Yes Non-Human
WASHU HISTORICAL Protist Systems   Slime mold (Physarum polycephalum) Draft Assembly PRJNA12851     Yes Non-Human
WASHU HISTORICAL Protist Systems   Spirotrich ciliate (Oxytricha trifallax [macronucleus]) Draft Assembly PRJNA74629     Yes Non-Human
WASHU HISTORICAL Protist Systems   Spirotrich ciliate (Oxytricha trifallax [micronucleus + equivalent macronucleus sequences]) Draft Assembly PRJNA74629     Yes Non-Human
BROAD HISTORICAL Protist Systems   Tetrahymena (Tetrahymena thermophila ) Draft Assembly PRJNA177802   100% Yes Non-Human
BAYLOR HISTORICAL Rat Genome   Rat (Rattus norvegicus) Draft Assembly PRJNA10629      Yes Non-Human
BAYLOR HISTORICAL Rat Genome   Rat (Rattus norvegicus) Genome Refinement PRJNA10629      No Non-Human
  HISTORICAL Rat Genome   Rat (Rattus norvegicus) SNP Discovery       Dropped Non-Human
WASHU HISTORICAL Roundworm Genomes   Roundworm (Caenorhabditis brenneri) Draft Assembly PRJNA20035     Yes Non-Human
WASHU HISTORICAL Roundworm Genomes   Roundworm (Caenorhabditis brenneri) Genome Refinement PRJNA20035     Yes Non-Human
WASHU HISTORICAL Roundworm Genomes   Roundworm (Caenorhabditis briggsae) Draft Assembly PRJNA20855     Yes Non-Human
WASHU HISTORICAL Roundworm Genomes   Roundworm (Caenorhabditis elegans) Finishing       Yes Non-Human
WASHU HISTORICAL Roundworm Genomes   Roundworm (Caenorhabditis japonica) Draft Assembly PRJNA12591     Yes Non-Human
WASHU HISTORICAL Roundworm Genomes   Roundworm (Caenorhabditis remanei) Draft Assembly PRJNA12588, PRJNA53967     Yes Non-Human
WASHU HISTORICAL Roundworm Genomes   Roundworm (Caenorhabditis remanei) Genome Refinement PRJNA12588, PRJNA53967     Yes Non-Human
BAYLOR HISTORICAL Tammar Wallaby Genome   Tammar Wallaby (Macropus eugenii) Draft Assembly PRJNA12587     Yes Non-Human
BAYLOR HISTORICAL modENCODE Comparative Genomics   Fruit fly (Drosophila biarmipes) Draft Assembly PRJNA62307     Yes Non-Human
BAYLOR HISTORICAL modENCODE Comparative Genomics   Fruit fly (Drosophila bipectinata) Draft Assembly PRJNA62313      Yes Non-Human
BAYLOR HISTORICAL modENCODE Comparative Genomics   Fruit fly (Drosophila elegans) Draft Assembly PRJNA62315      Yes Non-Human
BAYLOR HISTORICAL modENCODE Comparative Genomics   Fruit fly (Drosophila eugracilis) Draft Assembly PRJNA67709      Yes Non-Human
BAYLOR HISTORICAL modENCODE Comparative Genomics   Fruit fly (Drosophila ficusphila) Draft Assembly PRJNA62317     Yes Non-Human
BAYLOR HISTORICAL modENCODE Comparative Genomics   Fruit fly (Drosophila kikkawai) Draft Assembly PRJNA62319     Yes Non-Human
BAYLOR HISTORICAL modENCODE Comparative Genomics   Fruit fly (Drosophila melanogaster, OregonR) Draft Assembly PRJNA252961     Yes Non-Human
BAYLOR HISTORICAL modENCODE Comparative Genomics   Fruit fly (Drosophila rhopaloa) Draft Assembly PRJNA67665     Yes Non-Human
BAYLOR HISTORICAL modENCODE Comparative Genomics   Fruit fly (Drosophila takahashii) Draft Assembly PRJNA62321     Yes Non-Human
WASHU HISTORICAL modENCODE Comparative Genomics   Roundworm (Caenorhabditis sp. 11 (JU1373)) Draft Assembly PRJNA63453, PRJNA53597     Yes Non-Human
  HISTORICAL modENCODE Comparative Genomics   Roundworm (Caenorhabditis sp. 7 (JU1199)) Draft Assembly       Dropped Non-Human
  HISTORICAL modENCODE Comparative Genomics   Roundworm (Caenorhabditis sp. 9 (JU1325)) Draft Assembly       Dropped Non-Human

Last updated: June 06, 2014