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Elise Feingold, Ph.D.

Program Director, Genome Analysis
Division of Genome Sciences

Selected Publications

Yue F, Cheng Y, Breschi A, Vierstra J, Wu W, Ryba T et al.  (Mouse ENCODE Consortium) A comparative encyclopedia of DNA elements in the mouse genome. Nature, 515(7527):355-64. doi: 10.1038/nature13992. 2014. 

Boyle AP, Araya CL, Brdlik C, Cayting P, Cheng C, Cheng Y et al. Comparative analysis of regulatory information and circuits across distant species. Nature, 512(7515):453-6. doi: 10.1038/nature13668. 2014.

Ho JW, Jung YL, Liu T, Alver BH, Lee S, Ikegami K et al. Comparative analysis of metazoan chromatin organization. Nature, 512(7515):449-52. doi: 10.1038/nature13415. 2014. 

Gerstein MB, Rozowsky J, Yan KK, Wang D, Cheng C, Brown JB et al. (modENCODE Consortium) Comparative analysis of the transcriptome across distant species. Nature, 512(7515):445-8. doi: 10.1038/nature13424. 2014. 

Kellis M, Wold B, Snyder MP, Bernstein BE, Kundaje A, Marinov GK et al. Defining functional DNA elements in the human genome. Proc Natl Acad Sci U S A, 111(17):6131-8. doi: 10.1073/pnas.1318948111. 2014.

ENCODE Project Consortium. An integrated encyclopedia of DNA elements in the human genome. Nature, 489(7414):57-74. doi: 10.1038/nature11247. 2012. 

Mouse ENCODE Consortium, Stamatoyannopoulos JA, Snyder M, Hardison R, Ren B, Gingeras T et al. An encyclopedia of mouse DNA elements (Mouse ENCODE). Genome Biol, 13(8):418. doi: 10.1186/gb-2012-13-8-418.  2012.

ENCODE Project Consortium.  A user's guide to the encyclopedia of DNA elements (ENCODE). PLoS Biol, 9(4):e1001046. doi: 10.1371/journal.pbio.1001046. 2011.  

Gerstein MB, Lu ZJ, Van Nostrand EL, Cheng C, Arshinoff BI, Liu T et al.  Integrative analysis of the Caenorhabditis elegans genome by the modENCODE project.  Science. 2010 Dec 24;330(6012):1775-87. doi: 10.1126/science.1196914. PMID: 21177976 

modENCODE Consortium, Roy S, Ernst J, Kharchenko PV, Kheradpour P, Negre N et al.  Identification of functional elements and regulatory circuits by Drosophila modENCODEScience, 330(6012):1787-97. doi: 10.1126/science.1198374. 2010. 

MGC Project Team, Temple G, Gerhard DS, Rasooly R, Feingold EA, Good PJ et al.  The completion of the Mammalian Gene Collection (MGC). Genome Res, 19(12):2324-33. doi: 10.1101/gr.095976.109.  2009.   

ENCODE Project Consortium, Birney E, Stamatoyannopoulos JA, Dutta A, Guigó R, Gingeras TR et al.  Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project. Nature, 447(7146):799-816. doi: 10.1038/nature05874. 2007.  

ENCODE Project Consortium. The ENCODE (ENCyclopedia Of DNA Elements) Project. Science, 306(5696):636-40. doi: 10.1126/science.1105136. 2004. 

Gerhard DS, Wagner L, Feingold EA, Shenmen CM, Grouse LH, Schuler G et al. (Mammalian Gene Collection Project). The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)Genome Res, 14(10B):2121-7.  doi: 10.1101/gr.2596504. 2004.

Strausberg RL, Feingold EA, Grouse LH, Derge JG, Klausner RD, Collins FS et al. (Mammalian Gene Collection Project). Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Proc Natl Acad Sci U S A, 99(26):16899-903. doi: 10.1073/pnas.242603899. 2002. 

Strausberg RL, Feingold EA, Klausner RD, Collins FS. The mammalian gene collection. Science, 286(5439):455-7.  1999.

Feingold EA, Penny LA, Nienhuis AW, Forget BG.  An olfactory receptor gene is located in the extended human beta-globin gene cluster and is expressed in erythroid cellsGenomics, 61(1):15-23.  doi: 10.1006/geno.1999.5935. 1999.

Feingold EA, Forget BG.  The breakpoint of a large deletion causing hereditary persistence of fetal hemoglobin occurs within an erythroid DNA domain remote from the beta-globin gene cluster. Blood, 74(6):2178-86.  1989.

Tuan D, Feingold E, Newman M, Weissman SM, Forget BG.  Different 3' end points of deletions causing delta beta-thalassemia and hereditary persistence of fetal hemoglobin: implications for the control of gamma-globin gene expression in man. Proc Natl Acad Sci U S A, 80(22):6937-41. 1983,

Posted: September 17, 2018