Last updated: November 22, 2013
ENCODE Tutorial May 2013, Biology of Genomes, CSHL
On May 8, 2013, an ENCODE tutorial was held at the Biology of Genomes Meeting at Cold Spring Harbor Laboratory (CHSL), hosted jointly by the ENCODE (NIH/NHGRI) project.
The tutorial was prepared for biologists using human and/or mouse genetic data to study disease and basic biology and explain what data are available, what they mean, how they can be displayed and downloaded, and how they can be used in genetic research on human disease.
Agenda and Resources
All files are in format.
Introduction to ENCODE datatypes and their interpretation
Mike Snyder, Stanford University
- Presentation: ENCODE: Understanding the Genome
How to display and download ENCODE data
Mike Pazin, NHGRI
- Presentation: How to display and download ENCODE data
- ENCODE User's Guide
- Downloading and Displaying ENCODE Data
- Using HaploReg and RegulomeDB to Mine ENCODE Data
- Using sessions to save and share ENCODE browser views and settings
- A standard session for viewing ENCODE data
To use this session file, which is in .txt format, download it to your computer, then upload the file to the UCSC browser as described in the handout on 'Using sessions ...'
Using ENCODE and Roadmap data to illuminate disease-associated variation
John Stamatoyannopoulos, University of Washington