Skip to main content

James W. Thomas

Deputy Director, NIH Intramural Sequencing Center

Selected Publications

Callicrate, T., Dikow, R., Thomas, J.W., Mullikin, J.C., Jarvis, E.H., Fleischer, R.C, NISC. Comparative Sequencing Program.  Genomic resources for the endangered Hawaiian honeycreepers. BMC Genomics, 15:1098. 2014. PubMed

Davis, J.K., Mittel, L.B., Lowman, J.J., Thomas, P.J., Maney, D.L., Martin, C.L., NISC Comparative Sequencing Program, Thomas, J.W. Haplotype-based genomic sequencing of a chromosomal polymorphism in the white-throated sparrow (Zonotrichia albicollis).  Journal of Heredity, 102:380-390. 2011. PubMed

Keebaugh, A.C., Thomas, J.W. The evolutionary fate of the genes encoding the purine catabolic enzymes in hominoids, birds, and reptiles. Molecular Biology and Evolution, 27:1359-1369. 2010. PubMed

McGraw, L.A., Davis, J.K., Lowman, J.J., te Hallers, B., Koriabine, M., Young, L.J., de Jong, P.J., Rudd, M.K., Thomas, J.W. Development of genomic resources for the prairie vole (Microtus ochrogaster): construction of a BAC library and vole-mouse comparative cytogenetic map. BMC Genomics, 11:70. 2010. PubMed

Thomas, J.W., Cáceres, M., Lowman, J.J., Morehouse, C.B., Short, M.E., Baldwin, E.L., Maney,D.L., Martin, C.L. The chromosomal polymorphism linked to variation in social behavior in the white-throated sparrow (Zonotrichia albicollis) is a complex rearrangement and suppressor of recombination. Genetics, 179:1455-1468. 2008. PubMed

Cáceres, M., NISC Comparative Sequencing Program, Sullivan, R.T, Thomas, J.W. A recurrent inversion on the eutherian X chromosome. Proc. Natl. Acad. Sci. USA, 104:18571-18576. 2007. PubMed

Thomas, J.W., Touchman, J.W., Blakesley, R.W., Bouffard, G.G., Beckstrom-Sternberg, S.M., Margulies, E.H., Blanchette, M., Siepel, A.C., Thomas, P.J., McDowell, J.C., Maskeri, B., Hansen, N.F., Schwartz, M.S. Weber, R.J., Kent, W.J., Karolchik, D., Bruen, T.C., Bevan, R. Cutler, D.J., Schwartz, S., Elnitski, L., Idol, J.R., Prasad, A.B., Lee-Lin, S.-Q., Benjamin, B., Cariaga, K., Brinkley, C.P., Brooks, S.Y., Granite, S., Guan, X., Gupta, J., Haghighi, P., Ho, S.L., Huang, M.C.,  Karlins, E., Laric, P.L., Legaspi, R., Lim, M.J., Maduro, Q.L., Masiello, C.A., Mastrian, S.D., McCloskey, J.C., Pearson, R., Stantripop, S., Tiongson, E.E., Tran, J.T., Tsurgeon, C., Vogt, J.L., Walker, M.A., Wetherby, K.D., Wiggins, L.S., Young, A.C., Zhang, L-H., Osoegawa, K., Zhu, B., Zhao, B., Shu, C.L., de Jong, P.J., Lawrence, C.E., Smit, A.F., Chakravarti, A., Haussler, D., Green, P., Miller, W., Green, E.D. Comparative analyses of multi-species sequences from targeted genomic regions. Nature, 424:788-793. 2003. PubMed

Thomas, J.W., Prasad, A.B., Summers, T.J., Lee-Lin, S.Q., Maduro, V.V.B., Idol, J.R., Ryan, J.F., Thomas, P.J., McDowell, J.C., Green, E.D. Parallel construction of orthologous sequence-ready clone contig maps in multiple species. Genome Research, 12:1277-1285. 2002. PubMed

Thomas, J.W., Summers, T.J., Lee-Lin, S.-Q., Braden Maduro, V.V., Idol, J.R., Mastrian, S.D., Ryan, J.F., Jamison, D.C., and Green, E.D. Comparative genome mapping in the sequence-based era: early experience with human chromosome 7. Genome Research, 10:624-633. 2000. PubMed

Thomas, J.W., LaMantia, C.L., Magnuson, T. X-ray-induced mutations in mouse embryonic stem cells. Proc. Natl. Acad. Sci. USA 95:1114-1119.1998. PubMed

Posted: October 28, 2016