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Staff
Dr. James Thomas is the deputy director for the NIH Intramural Sequencing Center (NISC).
… as efficiency and quality control related aspects of the data production pipeline . his research interests are in the field of …
Fact Sheets
Data used to estimate the cost of sequencing the human genome over time since the Human Genome Project.
… program. here, nhgri provides an analysis of these data , which gives one view of the remarkable improvements in dna sequencing technologies and data-production pipelines in recent years. … the cost-accounting …
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… The NIH Data Commons NHGRI Council –February 6, 2017 Vivien Bonazzi Ph.D. Senior Advisor for Data Science & Data Commons National Institutes of Health, … CommonsArchitecture User Interface Data and Analysis Pipeline Management, Visualization FAIR Data Access Search, …
Research Funding
The Human Genome Reference Program (HGRP) maintains and updates the human genome reference and provides it to the scientific community.
… genome sequences. the center also disseminates the data and works closely with the other human genome reference … require the adoption of better ways of representing the data (e.g., as a genome graph), along with the development of … paten erich jarvis kerstin howe generate “high quality production grade” assemblies; generate “finished” t2t …
The Genomics Landscape
In the June 2019 edition of The Genomics Landscape, NHGRI Director Eric Green details the legacy of the Human Microbiome Project as it reaches completion.
… pipelines for analyzing and interpreting microbiome data . it also established clinical protocols for sampling … now greatly facilitate microbiome research worldwide. hmp data is available through the hmp data coordination center website . … dr. dan kastner , nhgri …
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… to resource ¥   Develop analytical tools to enhance data utility ¥   Make data , tools, analyses and assembled … !  Limited focus on mouse !  Flexibility in overall pipeline 9 2- Functional Characterization Centers Purpose : … 2 centers, $7.5M TC/year, 5 years (1 year beyond data production ) Ð  Additional $2.6M in FY16 needed for existing …
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… ; • develop analytical tools to enhance the utility of the data ; and • make the data , tools, analyses and assembled e … c onditions and diseases . Approximately 25% of the production effort will be devoted to thorough interrogation … the human genome. • Flexibility in the overall production pipeline built into the funding plan in order to adjust to …
The Genomics Landscape
NHGRI medical genetics training programs provide an array of education opportunities
… this will require strategic efforts at every stage of the pipeline , beginning with 1) exposure to science and genomics … on genome.gov. …   on april 13-14, the nhgri genomic data science working group of the national advisory council … development; ethical, legal, and social implications; data and resource needs; and clinical applications for …
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… genomes of select model organisms. – Rapid pre-publication data release • Make resource freely available to community to … and quantitative level – genetic basis of disease 4 ENCODE Data Types Modified from PLoS Biol 9:e1001046, 2011 Science … Analysis Groups Technology Development Groups Data Production Groups 10 The ENCYCLOPEDIA Revised ENCODE Data
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… TCGA Pilot Phase Begins TCGA Expansion Phase Begins TCGA Production Ends 2009: Expansion Phase of TCGA “We are about … Medical Solutions” NCI/NHGRI Workshop July, 2005 5 TCGA Data Size and Scope Data Types: DNA Sequence RNA Sequence/Expression Copy Number …